SNP Profiles of ICS 9 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	CT	CT	AA	CC	GT	CT	CT	AA	AA	CC	AA
1._ICS_9	CT	AG	GG	CT	CT	AA	CC	GT	CT	CT	AA	AA	CC	AA
2._ICS_9	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CC	AA
3._ICS_9	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CC	AA
4._NA	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CC	AA
5._NA	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CC	AA
6._ICS_9	_	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CC	AA
7._ICS_9	CT	AG	CG	CT	TT	AA	_	GT	CT	CT	AA	AA	CC	AA
8._NA	CT	AG	CG	CT	TT	AA	_	GT	CT	CT	AA	AA	CC	AA
9._NA	_	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CC	AA
10._ICS_9	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
11._NA	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
12._ICS_9	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
13._ICS_9	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
14._NA	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
15._NA	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	GG	GT	AA	TT	CC	CC	TT	CC	CC
1._ICS_9	CT	AA	GG	TT	CC	GG	GT	AA	TT	CC	CC	TT	CC	CC
2._ICS_9	CT	AA	GG	TT	CC	GG	GT	GG	TT	CC	CC	TT	CC	CC
3._ICS_9	CT	AA	GG	TT	CC	GG	GT	GG	TT	CC	CC	TT	CC	CC
4._NA	CT	AA	GG	TT	CC	GG	GT	GG	TT	CC	CC	TT	CC	CC
5._NA	CT	AA	GG	TT	CC	GG	GT	GG	TT	CC	CC	TT	CC	CC
6._ICS_9	CT	AA	GG	TT	CC	GG	GT	GG	TT	CC	CC	TT	CC	CC
7._ICS_9	CT	AA	GG	TT	CC	GG	GT	GG	TT	CC	CC	TT	CC	CC
8._NA	CT	AA	GG	TT	CC	GG	GT	GG	TT	CC	CC	TT	CC	CC
9._NA	CT	AA	GG	TT	CC	GG	GT	GG	TT	CC	CC	TT	CC	CC
10._ICS_9	CT	AA	GG	TT	CC	_	GT	GG	CT	AC	CC	GT	CT	CC
11._NA	CT	AA	GG	TT	CC	_	GT	GG	CT	AC	CC	GT	CT	CC
12._ICS_9	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
13._ICS_9	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
14._NA	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
15._NA	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X
1._ICS_9	GG	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X
2._ICS_9	GG	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X
3._ICS_9	GG	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X
4._NA	GG	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X
5._NA	GG	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X
6._ICS_9	GG	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X
7._ICS_9	GG	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X
8._NA	GG	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X
9._NA	GG	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X
10._ICS_9	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
11._NA	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
12._ICS_9	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
13._ICS_9	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
14._NA	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
15._NA	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X

Input profile: ICS_9

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

1._ICS_9

identical
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

2._ICS_9

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8901 6

Dapeng Zhang, 2016

3._ICS_9

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8901 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._ICS_9 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._ICS_9 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._ICS_9

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8901 7

Dapeng Zhang, 2016

7._ICS_9

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8901 4

Dapeng Zhang, 2016

8._ICS_9 NA

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._ICS_9 NA

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

10._ICS_9

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8902 6

Dapeng Zhang, 2016

11._ICS_9 NA

83.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

12._ICS_9

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8902 5

Dapeng Zhang, 2016

13._ICS_9

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8902 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

14._ICS_9 NA

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

15._ICS_9 NA

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25