SNP Profiles of ICS 9 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
1._ICS_9	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
2._ICS_9	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
3._NA	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
4._NA	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
5._NA	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
6._ICS_9	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CC	AA
7._ICS_9	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CC	AA
8._NA	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CC	AA
9._NA	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CC	AA
10._ICS_9	_	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CC	AA
11._ICS_9	CT	AG	CG	CT	TT	AA	_	GT	CT	CT	AA	AA	CC	AA
12._NA	CT	AG	CG	CT	TT	AA	_	GT	CT	CT	AA	AA	CC	AA
13._NA	_	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CC	AA
14._ICS_9	CT	AG	GG	CT	CT	AA	CC	GT	CT	CT	AA	AA	CC	AA
15._ICS_9	CT	AG	GG	CT	CT	AA	CC	GT	CT	CT	AA	AA	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	GT	GG	CT	AC	CC	GT	CT	CC	AG
1._ICS_9	CT	AA	GG	TT	CC	GT	GG	CT	AC	CC	GT	CT	CC	AG
2._ICS_9	CT	AA	GG	TT	CC	GT	GG	CT	AC	CC	GT	CT	CC	AG
3._NA	CT	AA	GG	TT	CC	GT	GG	CT	AC	CC	GT	CT	CC	AG
4._NA	CT	AA	GG	TT	CC	GT	GG	CT	AC	CC	GT	CT	CC	AG
5._NA	CT	AA	GG	TT	CC	GT	GG	CT	AC	CC	GT	CT	CC	AG
6._ICS_9	CT	AA	GG	TT	CC	GT	GG	TT	CC	CC	TT	CC	CC	GG
7._ICS_9	CT	AA	GG	TT	CC	GT	GG	TT	CC	CC	TT	CC	CC	GG
8._NA	CT	AA	GG	TT	CC	GT	GG	TT	CC	CC	TT	CC	CC	GG
9._NA	CT	AA	GG	TT	CC	GT	GG	TT	CC	CC	TT	CC	CC	GG
10._ICS_9	CT	AA	GG	TT	CC	GT	GG	TT	CC	CC	TT	CC	CC	GG
11._ICS_9	CT	AA	GG	TT	CC	GT	GG	TT	CC	CC	TT	CC	CC	GG
12._NA	CT	AA	GG	TT	CC	GT	GG	TT	CC	CC	TT	CC	CC	GG
13._NA	CT	AA	GG	TT	CC	GT	GG	TT	CC	CC	TT	CC	CC	GG
14._ICS_9	CT	AA	GG	TT	CC	GT	AA	TT	CC	CC	TT	CC	CC	GG
15._ICS_9	CT	AA	GG	TT	CC	GT	AA	TT	CC	CC	TT	CC	CC	GG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
1._ICS_9	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
2._ICS_9	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
3._NA	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
4._NA	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
5._NA	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X
6._ICS_9	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X	X_X
7._ICS_9	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X	X_X
8._NA	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X	X_X
9._NA	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X	X_X
10._ICS_9	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X	X_X
11._ICS_9	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X	X_X
12._NA	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X	X_X
13._NA	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X	X_X
14._ICS_9	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X	X_X
15._ICS_9	GG	AT	CT	AG	GG	AC	CT	TT	CC	AT	GG	X_X	X_X	X_X

Input profile: ICS_9

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Mars Center for Cocoa Science, Brazil

Location: 8902 6

Dapeng Zhang, 2016

1._ICS_9

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8902 5

Dapeng Zhang, 2016

2._ICS_9

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8902 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

3._ICS_9 NA

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._ICS_9 NA

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

5._ICS_9 NA

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._ICS_9

88.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8901 6

Dapeng Zhang, 2016

7._ICS_9

88.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8901 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._ICS_9 NA

88.5 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._ICS_9 NA

88.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._ICS_9

88.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8901 7

Dapeng Zhang, 2016

11._ICS_9

88.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8901 4

Dapeng Zhang, 2016

12._ICS_9 NA

88.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

13._ICS_9 NA

88.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

14._ICS_9

83.3 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

15._ICS_9

83.3 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block3

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25