SNP Profiles of IMC 2 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AG	CG	TT	CC	TT	GG	CC	AA	GG	CC	AA	TT	AA	CC
1._IMC_2___	AG	GG	TT	CC	TT	TT	CC	AA	GG	CC	AA	TT	AT	CC
2._IMC_2___	AG	GG	TT	CC	TT	TT	CC	AA	GG	CC	AA	TT	AT	CC
3._IMC_2___	AG	GG	TT	CC	TT	TT	CC	AA	GG	CC	AA	TT	AT	CC
4._IMC_2___	AG	GG	TT	CC	TT	TT	CC	AA	GG	CC	AA	TT	AT	CC
5._IMC_2___	AG	GG	TT	CC	TT	TT	__	AA	GG	CC	AA	TT	AT	CC
6._IMC_2___	AG	GG	TT	CC	TT	TT	CC	AA	__	CC	AA	TT	AT	CC
7._IMC_2___	AG	GG	TT	CC	TT	TT	CC	AA	__	CC	AA	TT	AT	CC
8._IMC_2___	AG	GG	TT	CC	TT	TT	__	AA	GG	CC	AA	TT	AT	CC
9._IMC_2___	AG	GG	TT	CC	TT	TT	CC	AA	GG	CC	AA	TT	AT	CC
10._IMC_2___	AG	GG	TT	__	__	TT	__	__	__	CC	AA	__	__	__
11._IMC_2___	AG	CC	AA	CC	AA	AA	__	AA	GG	GG	AA	AA	AT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA	GG	AA	CT
1._IMC_2___	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG	GG	AT	CT
2._IMC_2___	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG	GG	AT	CT
3._IMC_2___	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG	GG	AT	CT
4._IMC_2___	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG	GG	AT	CT
5._IMC_2___	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG	GG	AT	CT
6._IMC_2___	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG	GG	AT	CT
7._IMC_2___	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG	GG	AT	CT
8._IMC_2___	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG	GG	AT	CT
9._IMC_2___	CT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG	AG	AT	CT
10._IMC_2___	TT	CC	GT	__	CC	AC	CG	GT	CC	AC	AG	__	AT	CT
11._IMC_2___	AA	GG	AC	__	GG	AC	CG	AC	__	AC	__	GG	AT	AG

	29	30	31	32	33	34
_Input profile	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._IMC_2___	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._IMC_2___	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._IMC_2___	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._IMC_2___	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._IMC_2___	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._IMC_2___	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._IMC_2___	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._IMC_2___	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._IMC_2___	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._IMC_2___	AC	CT	TT	CC	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._IMC_2___	AC	AG	AA	CC	TT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: IMC_2

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A41 T8

Dapeng Zhang, 2016

1._IMC_2

79.4 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 5 > FP

Dapeng Zhang, 2016

2._IMC_2

79.4 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 8

Dapeng Zhang, 2016

3._IMC_2 GC-04-042-3-06

79.4 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

4._IMC_2 GC-04-042-3-06

79.4 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

5._IMC_2

78.8 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 4 > FP

Dapeng Zhang, 2016

6._IMC_2

78.8 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 1

Dapeng Zhang, 2016

7._IMC_2 GC-04-042-3-06

78.8 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._IMC_2 GC-04-042-3-06

78.8 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

9._IMC_2 RUQ_828

76.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._IMC_2 RUQ_828

70.5 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._IMC_2 GC-04-42-3-6

40 %
30 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 6, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1484	2	TcSNP1458	3	TcSNP1442	4	TcSNP1350	5	TcSNP1270
6	TcSNP1253	7	TcSNP1165	8	TcSNP1075	9	TcSNP1062	10	TcSNP1060
11	TcSNP998	12	TcSNP994	13	TcSNP953	14	TcSNP917	15	TcSNP891
16	TcSNP872	17	TcSNP723	18	TcSNP645	19	TcSNP619	20	TcSNP591
21	TcSNP577	22	TcSNP560	23	TcSNP534	24	TcSNP529	25	TcSNP469
26	TcSNP429	27	TcSNP372	28	TcSNP242	29	TcSNP193	30	TcSNP151
31	TcSNP150	32	TcSNP144	33	TcSNP32	34	TcSNP25