SNP Profiles of IMC 2   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AGCGTTCCTTGGCCAAGGCCAATTAACC
1._IMC_2___
AGGGTTCCTTTTCCAAGGCCAATTATCC
2._IMC_2___
AGGGTTCCTTTTCCAAGGCCAATTATCC
3._IMC_2___
AGGGTTCCTTTTCCAAGGCCAATTATCC
4._IMC_2___
AGGGTTCCTTTTCCAAGGCCAATTATCC
5._IMC_2___
AGGGTTCCTTTT__AAGGCCAATTATCC
6._IMC_2___
AGGGTTCCTTTTCCAA__CCAATTATCC
7._IMC_2___
AGGGTTCCTTTTCCAA__CCAATTATCC
8._IMC_2___
AGGGTTCCTTTT__AAGGCCAATTATCC
9._IMC_2___
AGGGTTCCTTTTCCAAGGCCAATTATCC
10._IMC_2___
AGGGTT____TT______CCAA______
11._IMC_2___
AGCCAACCAAAA__AAGGGGAAAAATGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTCCGGAACCAAGGGGCTCCAAGGAACT
1._IMC_2___
TTCCGTAACCACGGGTCCACAGGGATCT
2._IMC_2___
TTCCGTAACCACGGGTCCACAGGGATCT
3._IMC_2___
TTCCGTAACCACGGGTCCACAGGGATCT
4._IMC_2___
TTCCGTAACCACGGGTCCACAGGGATCT
5._IMC_2___
TTCCGTAACCACGGGTCCACAGGGATCT
6._IMC_2___
TTCCGTAACCACGGGTCCACAGGGATCT
7._IMC_2___
TTCCGTAACCACGGGTCCACAGGGATCT
8._IMC_2___
TTCCGTAACCACGGGTCCACAGGGATCT
9._IMC_2___
CTCCGTAACCACGGGTCCACAGAGATCT
10._IMC_2___
TTCCGT__CCACCGGTCCACAG__ATCT
11._IMC_2___
AAGGAC__GGACCGAC__AC__GGATAG
 29 30 31 32 33 34         
_Input profile
ACCTGTACTTGGX_XX_XX_XX_XX_XX_XX_XX_X
1._IMC_2___
ACCTTTCCTTCGX_XX_XX_XX_XX_XX_XX_XX_X
2._IMC_2___
ACCTTTCCTTCGX_XX_XX_XX_XX_XX_XX_XX_X
3._IMC_2___
ACCTTTCCTTCGX_XX_XX_XX_XX_XX_XX_XX_X
4._IMC_2___
ACCTTTCCTTCGX_XX_XX_XX_XX_XX_XX_XX_X
5._IMC_2___
ACCTTTCCTTCGX_XX_XX_XX_XX_XX_XX_XX_X
6._IMC_2___
ACCTTTCCTTCGX_XX_XX_XX_XX_XX_XX_XX_X
7._IMC_2___
ACCTTTCCTTCGX_XX_XX_XX_XX_XX_XX_XX_X
8._IMC_2___
ACCTTTCCTTCGX_XX_XX_XX_XX_XX_XX_XX_X
9._IMC_2___
ACCTTTCCTTCGX_XX_XX_XX_XX_XX_XX_XX_X
10._IMC_2___
ACCTTTCC____X_XX_XX_XX_XX_XX_XX_XX_X
11._IMC_2___
ACAGAACCTTCGX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: IMC_2

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A41 T8
 Dapeng Zhang, 2016

1._IMC_2

79.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 5 > FP
 Dapeng Zhang, 2016

2._IMC_2

79.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 8
 Dapeng Zhang, 2016

3._IMC_2 GC-04-042-3-06

79.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

4._IMC_2 GC-04-042-3-06

79.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._IMC_2

78.8 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 4 > FP
 Dapeng Zhang, 2016

6._IMC_2

78.8 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 1
 Dapeng Zhang, 2016

7._IMC_2 GC-04-042-3-06

78.8 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._IMC_2 GC-04-042-3-06

78.8 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

9._IMC_2 RUQ_828

76.5 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._IMC_2 RUQ_828

70.5 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._IMC_2 GC-04-42-3-6

40 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 6, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1350 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1075 9TcSNP1062 10TcSNP1060
11TcSNP998 12TcSNP994 13TcSNP953 14TcSNP917 15TcSNP891
16TcSNP872 17TcSNP723 18TcSNP645 19TcSNP619 20TcSNP591
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP193 30TcSNP151
31TcSNP150 32TcSNP144 33TcSNP32 34TcSNP25