SNP Profiles of POUND 18   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGGGTTCTCCTTTTCCCCAAGGCCAA
1._IMC_2___
CCAGGGTTCTCCTTTTCCCCAAGGCCAA
2._IMC_2___
CCAGGGTTCTCCTTTTCCCCAAGGCCAA
3._IMC_2___
CCAGGGTTCTCCTTTTCCCCAAGGCCAA
4._IMC_2___
CCAGGGTTCTCCTTTTCCCCAAGGCCAA
5._IMC_2___
CCAGGGTTCTCCTTTT__CCAAGGCCAA
6._IMC_2___
CCAGGGTTCTCCTTTTCCCCAA__CCAA
7._IMC_2___
CCAGGGTTCTCCTTTTCCCCAA__CCAA
8._IMC_2___
CCAGGGTTCTCCTTTT__CCAAGGCCAA
9._IMC_2___
__AGGGTT______TT________CCAA
10._IMC_2___
__AGCGTT__CCTTGGCC__AAGGCCAA
11._IMC_2___
GGAGCCAAAGCCAAAA____AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCCCTCCGTAACCACGGGTCCAC
1._IMC_2___
TTATGGCCTTCCGTAACCACGGGTCCAC
2._IMC_2___
TTATGGCCTTCCGTAACCACGGGTCCAC
3._IMC_2___
TTATGGCCTTCCGTAACCACGGGTCCAC
4._IMC_2___
TTATGGCCTTCCGTAACCACGGGTCCAC
5._IMC_2___
TTATGGCCTTCCGTAACCACGGGTCCAC
6._IMC_2___
TTATGGCCTTCCGTAACCACGGGTCCAC
7._IMC_2___
TTATGGCCTTCCGTAACCACGGGTCCAC
8._IMC_2___
TTATGGCCTTCCGTAACCACGGGTCCAC
9._IMC_2___
________TTCCGT__CCACCGGTCCAC
10._IMC_2___
TTAA__CCTTCCGGAACCAAGGGGCTCC
11._IMC_2___
AAATGGGGAAGGAC__GGACCGAC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGAGATCTAGCCACCTTTCCTTCGX_XX_X
1._IMC_2___
AGGGATCTAGCCACCTTTCCTTCGX_XX_X
2._IMC_2___
AGGGATCTAGCCACCTTTCCTTCGX_XX_X
3._IMC_2___
AGGGATCTAGCCACCTTTCCTTCGX_XX_X
4._IMC_2___
AGGGATCTAGCCACCTTTCCTTCGX_XX_X
5._IMC_2___
AGGGATCTAGCCACCTTTCCTTCGX_XX_X
6._IMC_2___
AGGGATCTAGCCACCTTTCCTTCGX_XX_X
7._IMC_2___
AGGGATCTAGCCACCTTTCCTTCGX_XX_X
8._IMC_2___
AGGGATCTAGCCACCTTTCCTTCGX_XX_X
9._IMC_2___
AG__ATCTAGCCACCTTTCC____X_XX_X
10._IMC_2___
AAGGAACT____ACCTGTACTTGGX_XX_X
11._IMC_2___
__GGATAGAGGGACAGAACCTTCGX_XX_X

Input profile: IMC_2 RUQ_828

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._IMC_2

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 5 > FP
 Dapeng Zhang, 2016

2._IMC_2

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 8
 Dapeng Zhang, 2016

3._IMC_2 GC-04-042-3-06

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

4._IMC_2 GC-04-042-3-06

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._IMC_2

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 4 > FP
 Dapeng Zhang, 2016

6._IMC_2

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4306 1
 Dapeng Zhang, 2016

7._IMC_2 GC-04-042-3-06

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._IMC_2 GC-04-042-3-06

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

9._IMC_2 RUQ_828

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._IMC_2

76.5 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A41 T8
 Dapeng Zhang, 2016

11._IMC_2 GC-04-42-3-6

45.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 6, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25