SNP Profiles of POUND 18 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	CC	AA	TT
1._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	CC	AA	TT
2._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	CC	AA	TT
3._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	CC	AA	TT
4._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	CC	AA	TT
5._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	CC	AA	TT
6._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	__	CC	AA	CC	AA	TT
7._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	__	CC	AA	CC	AA	TT
8._IMC_2___	__	AG	GG	TT	__	__	__	TT	__	__	__	CC	AA	__
9._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	CC	AA	TT
10._IMC_2___	__	AG	CG	TT	__	CC	TT	GG	CC	__	AA	CC	AA	TT
11._IMC_2___	GG	AG	CC	AA	AG	CC	AA	AA	__	__	AA	GG	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
1._IMC_2___	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
2._IMC_2___	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
3._IMC_2___	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
4._IMC_2___	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
5._IMC_2___	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
6._IMC_2___	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
7._IMC_2___	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
8._IMC_2___	__	__	__	TT	CC	GT	__	CC	AC	CG	GT	CC	AC	AG
9._IMC_2___	AT	GG	CC	CT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
10._IMC_2___	AA	__	CC	TT	CC	GG	AA	CC	AA	GG	GG	CT	CC	AA
11._IMC_2___	AT	GG	GG	AA	GG	AC	__	GG	AC	CG	AC	__	AC	__

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
1._IMC_2___	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
2._IMC_2___	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
3._IMC_2___	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
4._IMC_2___	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
5._IMC_2___	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
6._IMC_2___	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
7._IMC_2___	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
8._IMC_2___	__	AT	CT	AG	CC	AC	CT	TT	CC	__	__	X_X	X_X	X_X
9._IMC_2___	AG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
10._IMC_2___	GG	AA	CT	__	__	AC	CT	GT	AC	TT	GG	X_X	X_X	X_X
11._IMC_2___	GG	AT	AG	AG	GG	AC	AG	AA	CC	TT	CG	X_X	X_X	X_X

Input profile: IMC_2

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Mars Center for Cocoa Science, Brazil

Location: 4306 1

Dapeng Zhang, 2016

1._IMC_2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 5 > FP

Dapeng Zhang, 2016

2._IMC_2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 8

Dapeng Zhang, 2016

3._IMC_2 GC-04-042-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

4._IMC_2 GC-04-042-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

5._IMC_2 GC-04-042-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

6._IMC_2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 4 > FP

Dapeng Zhang, 2016

7._IMC_2 GC-04-042-3-06

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

8._IMC_2 RUQ_828

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._IMC_2 RUQ_828

97.4 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._IMC_2

78.8 %
33 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A41 T8

Dapeng Zhang, 2016

11._IMC_2 GC-04-42-3-6

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 6, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25