SNP Profiles of POUND 18 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CC	AA
1._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CC	AA
2._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CC	AA
3._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CC	AA
4._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	__	CC	AA	GG	CC	AA
5._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	__	CC	AA
6._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	__	CC	AA
7._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	__	CC	AA	GG	CC	AA
8._IMC_2___	__	AG	GG	TT	__	__	__	TT	__	__	__	__	CC	AA
9._IMC_2___	CC	AG	GG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CC	AA
10._IMC_2___	__	AG	CG	TT	__	CC	TT	GG	CC	__	AA	GG	CC	AA
11._IMC_2___	GG	AG	CC	AA	AG	CC	AA	AA	__	__	AA	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
1._IMC_2___	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
2._IMC_2___	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
3._IMC_2___	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
4._IMC_2___	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
5._IMC_2___	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
6._IMC_2___	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
7._IMC_2___	TT	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC
8._IMC_2___	__	__	__	__	TT	CC	GT	__	CC	AC	CG	GT	CC	AC
9._IMC_2___	TT	AT	GG	CC	CT	CC	GT	AA	CC	AC	GG	GT	CC	AC
10._IMC_2___	TT	AA	__	CC	TT	CC	GG	AA	CC	AA	GG	GG	CT	CC
11._IMC_2___	AA	AT	GG	GG	AA	GG	AC	__	GG	AC	CG	AC	__	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
1._IMC_2___	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
2._IMC_2___	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
3._IMC_2___	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
4._IMC_2___	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
5._IMC_2___	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
6._IMC_2___	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
7._IMC_2___	AG	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
8._IMC_2___	AG	__	AT	CT	AG	CC	AC	CT	TT	CC	__	__	X_X	X_X
9._IMC_2___	AG	AG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X
10._IMC_2___	AA	GG	AA	CT	__	__	AC	CT	GT	AC	TT	GG	X_X	X_X
11._IMC_2___	__	GG	AT	AG	AG	GG	AC	AG	AA	CC	TT	CG	X_X	X_X

Input profile: IMC_2

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Mars Center for Cocoa Science, Brazil

Location: 4306 8

Dapeng Zhang, 2016

1._IMC_2

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 5 > FP

Dapeng Zhang, 2016

2._IMC_2 GC-04-042-3-06

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

3._IMC_2 GC-04-042-3-06

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

4._IMC_2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 4 > FP

Dapeng Zhang, 2016

5._IMC_2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 1

Dapeng Zhang, 2016

6._IMC_2 GC-04-042-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._IMC_2 GC-04-042-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

8._IMC_2 RUQ_828

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._IMC_2 RUQ_828

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._IMC_2

79.4 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A41 T8

Dapeng Zhang, 2016

11._IMC_2 GC-04-42-3-6

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 6, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25