SNP Profiles of MARPER 42   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACGTTCTACCCGTCTCTAAAGCTAGCT
1._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
2._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
3._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
4._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
5._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
6._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
7._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
8._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
9._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
10._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
11._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
12._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
13._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
14._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
15._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
16._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
17._IMC_47___
AACGTTCTACCCGTCTCTAAAGCTAGCT
18._IMC_47___
AACGTTTTACCTGTCTCTAAAGCCAACT
19._IMC_47___
__CG________GT__CC__GG__AA__
20._IMC_47___
AGCGTTCTCCTTGTCTCCATGGCCAGTT
21._IMC_47___
AGCGTT______GT________CCAA__
22._IMC_47___
AGCGTTCTCCTTGTCTCCATGGCCAATT
23._IMC_47___
AGGGTTCTCCTTGTCCCCAAGGCTAATT
24._IMC_47___
AACGAAAGACGGAC____AAAGAGAGAG
25._IMC_47___
AGCGAAAGCCAAAA____ATGGGGAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCGCTCTCCGTAATTACCGGTCTACAG
1._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
2._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
3._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
4._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
5._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
6._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
7._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
8._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
9._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
10._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
11._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
12._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
13._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
14._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
15._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
16._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
17._IMC_47___
ATCGCTCTCCGTAATTACCGGTCTACAG
18._IMC_47___
ATCGCTCTCCGGAGTTACCCGTCTACAG
19._IMC_47___
________CCGGAA__ACGG____AC__
20._IMC_47___
AAGGCCCTCCGGAACCACGGGGCCACAA
21._IMC_47___
______TTCCGG__CCACCGGGCCACAA
22._IMC_47___
AAGGCCTTCCGGAACCACGGGGCCACAA
23._IMC_47___
ATGGCCCTCCGGAACCAAGGGTCTCCAA
24._IMC_47___
ATCGAGAGGGAC__AAACCGAC__AC__
25._IMC_47___
AAGGGGAAGGCC__GGACCGCC__AC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
1._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
2._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
3._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
4._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
5._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
6._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
7._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
8._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
9._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
10._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
11._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
12._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
13._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
14._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
15._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
16._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
17._IMC_47___
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
18._IMC_47___
AGATCTAG__ACCTGTCCAAGGX_XX_XX_X
19._IMC_47___
______AG________CC____X_XX_XX_X
20._IMC_47___
AGATCTAGCGACCTGTCCATCGX_XX_XX_X
21._IMC_47___
__ATCTAGCGACCTTTCC____X_XX_XX_X
22._IMC_47___
AGATCTAGCCACCTTTCCATCGX_XX_XX_X
23._IMC_47___
GGAATTAG__ACCTGTCCTTGGX_XX_XX_X
24._IMC_47___
AGATAGAGCGACAGCCAAATCGX_XX_XX_X
25._IMC_47___
AGATAGAGCGACAGAACCATCGX_XX_XX_X

Input profile: IMC_47

 
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Mars Center for Cocoa Science, Brazil
Location: 8302 7
 Dapeng Zhang, 2016

1._IMC_47

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 1 > FP
 Dapeng Zhang, 2016

2._IMC_47 GC-08-103-3-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._IMC_47 GC-08-103-3-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._IMC_47 GC-08-103-3-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._IMC_47 GC-08-103-3-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

6._IMC_47

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 4
 Dapeng Zhang, 2016

7._IMC_47

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 10
 Dapeng Zhang, 2016

8._IMC_47

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 11
 Dapeng Zhang, 2016

9._IMC_47

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 12
 Dapeng Zhang, 2016

10._IMC_47

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 3 > FP
 Dapeng Zhang, 2016

11._IMC_47

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 5 > FP
 Dapeng Zhang, 2016

12._IMC_47

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 6 > FP
 Dapeng Zhang, 2016

13._IMC_47 GC-08-103-3-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

14._IMC_47 GC-08-103-3-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._IMC_47 GC-08-103-3-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._IMC_47 GC-08-103-3-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

17._IMC_47 GC-08-103-3-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

18._IMC_47

84.2 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T1
 Dapeng Zhang, 2016

19._IMC_47 RUQ_849B

73.1 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
IMC
0.714 LCT
0.056 Nac
0.163 Sca
0.056

20._IMC_47 RUQ_849

71.8 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._IMC_47 RUQ_849

70.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._IMC_47

66.7 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T6
 Dapeng Zhang, 2016

23._IMC_47

64.5 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D242
 Dapeng Zhang, 2016

24._IMC_47 GC-08-103-3-2

55.9 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: Brazil_Selections_Poss_grandparent/ CW
 Mars, 2018

25._IMC_47 MITC-000413

42.6 %
34 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1414 5TcSNP1350
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25