SNP Profiles of IMC-47   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAACGTTCTACCCGTCTCTAAAGCTAG
1._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
2._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
3._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
4._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
5._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
6._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
7._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
8._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
9._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
10._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
11._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
12._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
13._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
14._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
15._IMC_47___
CTAACGTTCTACCCGTCTCTAAAGCTAG
16._IMC_47___
__AACGTTCTACCCGTCTCTAAAGCTAG
17._IMC_47___
__AACGTTCTACCCGTCTCTAAAGCTAG
18._IMC_47___
CTAACGTTTTACCTGTCTCTAAAGCCAA
19._IMC_47___
____CG________GT__CC__GG__AA
20._IMC_47___
CCAGCGTTCTCCTTGTCTCCATGGCCAG
21._IMC_47___
__AGCGTT______GT________CCAA
22._IMC_47___
CCAGCGTTCTCCTTGTCTCCATGGCCAA
23._IMC_47___
CCAGGGTTCTCCTTGTCCCCAAGGCTAA
24._IMC_47___
AGAACGAAAGACGGAC____AAAGAGAG
25._IMC_47___
GGAGCGAAAGCCAAAA____ATGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTATCGCTCTCCGTAATTACCGGTCTAC
1._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
2._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
3._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
4._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
5._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
6._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
7._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
8._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
9._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
10._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
11._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
12._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
13._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
14._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
15._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
16._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
17._IMC_47___
CTATCGCTCTCCGTAATTACCGGTCTAC
18._IMC_47___
CTATCGCTCTCCGGAGTTACCCGTCTAC
19._IMC_47___
__________CCGGAA__ACGG____AC
20._IMC_47___
TTAAGGCCCTCCGGAACCACGGGGCCAC
21._IMC_47___
________TTCCGG__CCACCGGGCCAC
22._IMC_47___
TTAAGGCCTTCCGGAACCACGGGGCCAC
23._IMC_47___
TTATGGCCCTCCGGAACCAAGGGTCTCC
24._IMC_47___
AGATCGAGAGGGAC__AAACCGAC__AC
25._IMC_47___
AAAAGGGGAAGGCC__GGACCGCC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGAGATCTAGCGACCTGGAAATCGX_XX_X
1._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
2._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
3._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
4._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
5._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
6._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
7._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
8._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
9._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
10._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
11._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
12._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
13._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
14._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
15._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
16._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
17._IMC_47___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
18._IMC_47___
AGAGATCTAG__ACCTGTCCAAGGX_XX_X
19._IMC_47___
________AG________CC____X_XX_X
20._IMC_47___
AAAGATCTAGCGACCTGTCCATCGX_XX_X
21._IMC_47___
AA__ATCTAGCGACCTTTCC____X_XX_X
22._IMC_47___
AAAGATCTAGCCACCTTTCCATCGX_XX_X
23._IMC_47___
AAGGAATTAG__ACCTGTCCTTGGX_XX_X
24._IMC_47___
__AGATAGAGCGACAGCCAAATCGX_XX_X
25._IMC_47___
__AGATAGAGCGACAGAACCATCGX_XX_X

Input profile: IMC_47

 
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Mars Center for Cocoa Science, Brazil
Location: 8302 6 > FP
 Dapeng Zhang, 2016

1._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 12
 Dapeng Zhang, 2016

2._IMC_47 GC-08-103-3-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._IMC_47 GC-08-103-3-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._IMC_47 GC-08-103-3-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._IMC_47 GC-08-103-3-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

6._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 4
 Dapeng Zhang, 2016

7._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 10
 Dapeng Zhang, 2016

8._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 11
 Dapeng Zhang, 2016

9._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 1 > FP
 Dapeng Zhang, 2016

10._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 3 > FP
 Dapeng Zhang, 2016

11._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 5 > FP
 Dapeng Zhang, 2016

12._IMC_47 GC-08-103-3-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

13._IMC_47 GC-08-103-3-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._IMC_47 GC-08-103-3-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._IMC_47 GC-08-103-3-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._IMC_47

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 7
 Dapeng Zhang, 2016

17._IMC_47 GC-08-103-3-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._IMC_47

84.6 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T1
 Dapeng Zhang, 2016

19._IMC_47 RUQ_849B

73.1 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
IMC
0.714 LCT
0.056 Nac
0.163 Sca
0.056

20._IMC_47 RUQ_849

71.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._IMC_47 RUQ_849

70.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._IMC_47

66.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T6
 Dapeng Zhang, 2016

23._IMC_47

64.1 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D242
 Dapeng Zhang, 2016

24._IMC_47 GC-08-103-3-2

54.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: Brazil_Selections_Poss_grandparent/ CW
 Mars, 2018

25._IMC_47 MITC-000413

41.4 %
35 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25