SNP Profiles of SC 9 [UNK] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	GG	CT	CT	AA	CC	GT	CT	CT	AA	AG	CT	AG
1._JA_9_/37_[POU]___	CT	GG	GG	CT	CT	AA	CC	GT	CT	CT	AA	AG	CT	AG
2._JA_9_/37_[POU]___	TT	AA	GG	CC	TT	__	CC	TT	CC	TT	AA	AA	CC	GG
3._JA_9_/37_[POU]___	TT	AA	GG	CC	TT	__	CC	TT	CC	TT	AA	AA	CC	GG
4._JA_9_/37_[POU]___	TT	AA	GG	CC	TT	__	CC	TT	CC	TT	AA	AA	CC	GG
5._JA_9_/37_[POU]___	TT	AA	GG	CC	TT	__	CC	TT	CC	TT	AA	AA	CC	GG
6._JA_9_/37_[POU]___	TT	AA	GG	CC	TT	__	CC	TT	CC	TT	AA	AA	CC	GG
7._JA_9_/37_[POU]___	TT	AA	GG	CC	TT	__	CC	TT	CC	TT	AA	AA	CC	GG
8._JA_9_/37_[POU]___	TT	AA	GG	CC	TT	__	CC	TT	CC	TT	AA	AA	CC	GG
9._JA_9_/37_[POU]___	TT	AA	GG	CC	TT	__	CC	TT	CC	TT	AA	AA	CC	GG
10._JA_9_/37_[POU]___	TT	AA	GG	CC	TT	AA	CC	GT	CC	TT	AA	AA	CC	AG
11._JA_9_/37_[POU]___	AA	AA	CC	GG	AA	__	GG	AA	__	__	AA	AA	GG	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	CC	TT	CT	CG	GT	GG	TT	AA	CC	GT	TT	CC
1._JA_9_/37_[POU]___	CT	AT	CC	TT	CT	CG	GT	GG	TT	AA	CC	GT	TT	CC
2._JA_9_/37_[POU]___	TT	AA	CC	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
3._JA_9_/37_[POU]___	TT	AA	CC	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
4._JA_9_/37_[POU]___	TT	AA	CC	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
5._JA_9_/37_[POU]___	TT	AA	CC	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
6._JA_9_/37_[POU]___	TT	AA	CC	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
7._JA_9_/37_[POU]___	TT	AA	CC	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
8._JA_9_/37_[POU]___	TT	AA	CC	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
9._JA_9_/37_[POU]___	TT	AA	CC	TT	CC	GG	GG	GG	TT	AA	CC	TT	TT	CC
10._JA_9_/37_[POU]___	TT	AA	GG	TT	CC	GG	GG	AA	CT	CC	CC	TT	TT	CC
11._JA_9_/37_[POU]___	AA	AA	CC	AA	GG	CC	CC	__	AA	AA	CC	AA	__	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CT	AG	CC	AC	CT	GT	AC	AT	CG	X_X	X_X
1._JA_9_/37_[POU]___	AG	GG	AA	CT	AG	CC	AC	CT	GT	AC	AT	CG	X_X	X_X
2._JA_9_/37_[POU]___	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
3._JA_9_/37_[POU]___	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
4._JA_9_/37_[POU]___	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
5._JA_9_/37_[POU]___	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
6._JA_9_/37_[POU]___	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
7._JA_9_/37_[POU]___	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
8._JA_9_/37_[POU]___	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
9._JA_9_/37_[POU]___	AA	GG	AA	CC	AA	CC	AA	CC	TT	CC	TT	GG	X_X	X_X
10._JA_9_/37_[POU]___	AA	GG	AA	CC	AG	CC	AC	CT	TT	CC	TT	GG	X_X	X_X
11._JA_9_/37_[POU]___	__	GG	AA	GG	AA	GG	AA	GG	AA	CC	TT	GG	X_X	X_X

Input profile: JA_9_/37_[POU]

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Mars Center for Cocoa Science, Brazil

Location: 8193 2 > FP

Dapeng Zhang, 2016

1._JA_9_/37_[POU] GC-08-071-1-93

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

2._JA_9_/37_[POU]

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8193 4 > FP

Dapeng Zhang, 2016

3._JA_9_/37_[POU]

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8193 3 > FP

Dapeng Zhang, 2016

4._JA_9_/37_[POU]

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8193 1 > FP

Dapeng Zhang, 2016

5._JA_9_/37_[POU]

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8193 5

Dapeng Zhang, 2016

6._JA_9_/37_[POU] GC-08-071-1-93

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

7._JA_9_/37_[POU] GC-08-071-1-93

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

8._JA_9_/37_[POU] GC-08-071-1-93

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

9._JA_9_/37_[POU] GC-08-071-1-93

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._JA_9_/37_[POU]

65 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B E394 T8

Dapeng Zhang, 2016

11._JA_9_/37_[POU] GC-08-71-1-93

33.8 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 93, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25