SNP Profiles of LCTEEN 241 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	GG	CC	AA	CT
1._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	GG	CC	AA	CT
2._LCT_EEN_241	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	GG	CC	AA	CT
3._LCT_EEN_241	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	GG	CC	AA	CT
4._LCT_EEN_241	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	GG	CC	AA	CT
5._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	GG	CC	AA	CT
6._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	GG	CC	AA	CT
7._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	GG	CC	AA	CT
8._LCT_EEN_241	CC	GG	CC	TT	TT	AA	TT	_	TT	CC	GG	CC	AA	CT
9._GC-08-269-8-41	CC	GG	CC	TT	TT	AA	TT	_	TT	CC	GG	CC	AA	CT
10._RUQ_185	_	GG	CC	TT	_	_	_	GG	_	_	_	CC	AA	_
11._RUQ_185	CC	GG	CC	TT	TT	AA	TT	GG	CT	CC	GG	CC	AA	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CG	TT	CG	GG	AG	TT	CC	GG	GG	CC	AC	GG	AA
1._GC-08-269-8-41	AT	CG	TT	CG	GG	AG	TT	CC	GG	GG	CC	AC	GG	AA
2._LCT_EEN_241	AT	CG	TT	CG	GG	_	TT	CC	GG	GG	CC	AC	GG	AA
3._LCT_EEN_241	AT	CG	TT	CG	GG	_	TT	CC	GG	GG	CC	AC	GG	AA
4._LCT_EEN_241	AT	CG	TT	CG	GG	_	TT	CC	GG	GG	CC	AC	GG	AA
5._GC-08-269-8-41	AT	CG	TT	CG	GG	_	TT	CC	GG	GG	CC	AC	GG	AA
6._GC-08-269-8-41	AT	CG	TT	CG	GG	_	TT	CC	GG	GG	CC	AC	GG	AA
7._GC-08-269-8-41	AT	CG	TT	CG	GG	_	TT	CC	GG	GG	CC	AC	GG	AA
8._LCT_EEN_241	AT	CG	TT	CG	GG	_	TT	CC	GG	GG	CC	AC	GG	AA
9._GC-08-269-8-41	AT	CG	TT	CG	GG	_	TT	CC	GG	GG	CC	AC	GG	AA
10._RUQ_185	_	_	TT	CG	GG	_	TT	CC	GG	GG	CC	AC	GG	_
11._RUQ_185	AT	CG	CT	CG	GG	AG	CT	CC	GG	GG	CC	AC	GG	AA

	29	30	31	32	33	34	35
_Input profile	CC	AG	CC	TT	GG	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-08-269-8-41	CC	AG	CC	TT	GG	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._LCT_EEN_241	CC	AG	CC	TT	GG	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._LCT_EEN_241	CC	AG	CC	TT	GG	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._LCT_EEN_241	CC	AG	CC	TT	GG	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-08-269-8-41	CC	AG	CC	TT	GG	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-08-269-8-41	CC	AG	CC	TT	GG	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-08-269-8-41	CC	AG	CC	TT	GG	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._LCT_EEN_241	CC	AG	CC	TT	GG	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-08-269-8-41	CC	AG	CC	TT	GG	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._RUQ_185	CC	AG	CC	TT	GG	AA	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_185	CC	AG	CC	TT	GG	AA	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_241

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Mars Center for Cocoa Science, Brazil

Location: 8841 2

Dapeng Zhang, 2016

1._LCT_EEN_241 GC-08-269-8-41

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

2._LCT_EEN_241

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 6

Dapeng Zhang, 2016

3._LCT_EEN_241

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 4

Dapeng Zhang, 2016

4._LCT_EEN_241

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._LCT_EEN_241 GC-08-269-8-41

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._LCT_EEN_241 GC-08-269-8-41

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._LCT_EEN_241 GC-08-269-8-41

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

8._LCT_EEN_241

identical
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 3

Dapeng Zhang, 2016

9._LCT_EEN_241 GC-08-269-8-41

identical
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

10._LCT_EEN_241 RUQ_185

identical
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._LCT_EEN_241 RUQ_185

95.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP891	18	TcSNP872	19	TcSNP723	20	TcSNP645
21	TcSNP619	22	TcSNP591	23	TcSNP577	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP242	30	TcSNP230
31	TcSNP193	32	TcSNP151	33	TcSNP150	34	TcSNP144	35	TcSNP32