SNP Profiles of LCT EEN 280 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	TT	TT	AC	TT	GG	TT	CC	AA	GG	CC	AA
1._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
2._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
3._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
4._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
5._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
6._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
7._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
8._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
9._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
10._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
11._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
12._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
13._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
14._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
15._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
16._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	CG	TT	TT	CG	GG	GG	CT	CC	GG	GG	CC	AA
1._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
2._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
3._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
4._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
5._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
6._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
7._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
8._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
9._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
10._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
11._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
12._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
13._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
14._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
15._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA
16._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	_	CT	CC	GG	GG	CC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
1._LCT_EEN_280	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
2._LCT_EEN_280	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
3._LCT_EEN_280	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
4._LCT_EEN_280	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
5._LCT_EEN_280	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
6._LCT_EEN_280	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
7._LCT_EEN_280	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
8._LCT_EEN_280	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
9._GC-08-070-1-92	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
10._GC-08-070-1-92	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
11._GC-08-070-1-92	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
12._GC-08-070-1-92	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
13._GC-08-070-1-92	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
14._GC-08-070-1-92	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
15._GC-08-070-1-92	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
16._GC-08-070-1-92	GG	AA	TT	CC	AG	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X

Input profile: LCT_EEN_280

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A144 T1

Dapeng Zhang, 2016

1._LCT_EEN_280

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8192 9 > FP

Dapeng Zhang, 2016

2._LCT_EEN_280

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8192 6 > FP

Dapeng Zhang, 2016

3._LCT_EEN_280

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 2 > FP

Dapeng Zhang, 2016

4._LCT_EEN_280

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 1 > FP

Dapeng Zhang, 2016

5._LCT_EEN_280

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 11

Dapeng Zhang, 2016

6._LCT_EEN_280

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 10

Dapeng Zhang, 2016

7._LCT_EEN_280

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 7

Dapeng Zhang, 2016

8._LCT_EEN_280

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

11._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

12._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP3

13._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

14._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP4

15._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

16._LCT_EEN_280 GC-08-070-1-92

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25