SNP Profiles of LCT EEN 280 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
1._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
2._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
3._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
4._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
5._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
6._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
7._LCT_EEN_280	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
8._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
9._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
10._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
11._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
12._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
13._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
14._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
15._GC-08-070-1-92	CC	GG	CC	TT	TT	AA	TT	GG	TT	CC	AA	GG	CC	AA
16._LCT_EEN_280	CC	GG	CC	TT	TT	AC	TT	GG	TT	CC	AA	GG	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
1._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
2._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
3._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
4._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
5._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
6._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
7._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
8._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
9._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
10._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
11._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
12._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
13._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
14._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
15._GC-08-070-1-92	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG
16._LCT_EEN_280	CT	AA	CG	TT	TT	CG	GG	CT	CC	GG	GG	CC	AA	GG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
1._LCT_EEN_280	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
2._LCT_EEN_280	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
3._LCT_EEN_280	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
4._LCT_EEN_280	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
5._LCT_EEN_280	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
6._LCT_EEN_280	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
7._LCT_EEN_280	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
8._GC-08-070-1-92	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
9._GC-08-070-1-92	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
10._GC-08-070-1-92	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
11._GC-08-070-1-92	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
12._GC-08-070-1-92	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
13._GC-08-070-1-92	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
14._GC-08-070-1-92	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
15._GC-08-070-1-92	AA	TT	CC	AG	CC	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X
16._LCT_EEN_280	AA	TT	CC	AG	_	CC	TT	GG	AC	AA	GG	X_X	X_X	X_X

Input profile: LCT_EEN_280

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 11

Dapeng Zhang, 2016

1._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 9 > FP

Dapeng Zhang, 2016

2._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 6 > FP

Dapeng Zhang, 2016

3._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 2 > FP

Dapeng Zhang, 2016

4._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 1 > FP

Dapeng Zhang, 2016

5._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 10

Dapeng Zhang, 2016

6._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 7

Dapeng Zhang, 2016

7._LCT_EEN_280

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8192 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._LCT_EEN_280 GC-08-070-1-92

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._LCT_EEN_280 GC-08-070-1-92

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

10._LCT_EEN_280 GC-08-070-1-92

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

11._LCT_EEN_280 GC-08-070-1-92

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP3

12._LCT_EEN_280 GC-08-070-1-92

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

13._LCT_EEN_280 GC-08-070-1-92

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP4

14._LCT_EEN_280 GC-08-070-1-92

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

15._LCT_EEN_280 GC-08-070-1-92

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

16._LCT_EEN_280

98.7 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A144 T1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25