SNP Profiles of LCT EEN 37 /F   View Data

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 Key

 1234567891011121314
_Input profile
CCGGCGCTCTCCTTGGTTCCATGGCCAA
1._RUQ_153
CCGGCGCTCTCCTTGGTTCCATGGCCAA
2._LCT_EEN_37_/F
-GGCGCTCTCCTTGGTT-ATGGCCAA
3._RUQ_153
_GGCGCT___GG____CCAA
4._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
5._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
6._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
7._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
8._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
9._GC-08-160-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
10._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
11._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
12._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
13._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
14._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
15._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
16._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
17._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
18._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
19._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
20._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
21._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
22._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
23._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
24._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
25._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
26._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
27._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
28._GC-02-027-4-03
CCAGCCCTCT_CTGTCTCCATAGCCAG
29._LCT_EEN_37_/F
CCAGCCCTCT_CTGTCTCCATAGCCAG
30._GC-08-160-4-03
CCAGCGCTTTCCTTTTCCCCAAAGCCAG
31._LCT_EEN_37_/F
CCAGCGCTTTCCTTTTCCCCAAAGCCAG
32._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
33._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
34._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
35._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
36._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
37._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
38._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
39._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
40._RUQ_153
GGGGCGAGAG_AACC__ATGGGGAA
 1516171819202122232425262728
_Input profile
CTAACGTTTTCGGGAATTCCGGGGCCAC
1._RUQ_153
CTAACGTTTTCGGGAATTCCGGGGCCAC
2._LCT_EEN_37_/F
CTAACGTTTTCGGGAATTCCGGGGCCAC
3._RUQ_153
____TTCGGG_TTCCCGGGCCAC
4._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
5._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
6._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
7._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
8._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
9._GC-08-160-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
10._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
11._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
12._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
13._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
14._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
15._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
16._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
17._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
18._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
19._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
20._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
21._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
22._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
23._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
24._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
25._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
26._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
27._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
28._GC-02-027-4-03
CCATCGCTCTCGGTAACTCCCGGTCTAC
29._LCT_EEN_37_/F
CCATCGCTCTCGGTAACTCCCGGTCTAC
30._GC-08-160-4-03
CCAACGCTCCGGGGGGCTACCGGT_AA
31._LCT_EEN_37_/F
CCAACGCTCCGGGGGGCTACCGGT_AA
32._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCCCGTCTAC
33._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTTCCCCGTCTAC
34._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCCCGTCTAC
35._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCCCGTCTAC
36._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTTCCCCGTCTAC
37._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTTCCCCGTCTAC
38._GC-08-160-4-03
CTATCGCTCTCGGGAGTT_CCGTCTAC
39._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTT_CCGTCTAC
40._RUQ_153
AGAACGAAAACGCC_AACCCGCC_AC
 293031323334353637383940  
_Input profile
AGAAATCCAGCCCCTTGGAAATGGX_XX_X
1._RUQ_153
AGAAATCCAGCCCCTTGGAAATGGX_XX_X
2._LCT_EEN_37_/F
AGAAATCCAG-CCTTGGAAATCGX_XX_X
3._RUQ_153
AG_-CCAGCCCCTTGGAA__X_XX_X
4._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
5._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
6._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
7._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
8._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
9._GC-08-160-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
10._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
11._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
12._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
13._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
14._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
15._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
16._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
17._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
18._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
19._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
20._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
21._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
22._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
23._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
24._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
25._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
26._GC-02-027-4-03
AGAAATCCAGCCCC_GGAAATCGX_XX_X
27._LCT_EEN_37_/F
AGAAATCCAGCCCC_GGAAATCGX_XX_X
28._GC-02-027-4-03
GGAGAACTAGCCCCTTGTCCATCGX_XX_X
29._LCT_EEN_37_/F
GGAGAACTAGCCCCTTGTCCATCGX_XX_X
30._GC-08-160-4-03
GGGGAACCAGCCAATTTTAAATGGX_XX_X
31._LCT_EEN_37_/F
GGGGAACCAGCCAATTTTAAATGGX_XX_X
32._GC-08-160-4-03
AGGGAACTAACCACCTGTACATCGX_XX_X
33._LCT_EEN_37_/F
AGGGAACTAACCACCTGTACATCGX_XX_X
34._GC-08-160-4-03
AGGGAACTAACCACCTGTACATCGX_XX_X
35._GC-08-160-4-03
AGGGAACTAACCACCTGTACATCGX_XX_X
36._LCT_EEN_37_/F
AGGGAACTAACCACCTGTACATCGX_XX_X
37._LCT_EEN_37_/F
AGGGAACTAACCACCTGTACATCGX_XX_X
38._GC-08-160-4-03
AGGGAACTAACCACCTGTACATCGX_XX_X
39._LCT_EEN_37_/F
AGGGAACTAACCACCTGTACATCGX_XX_X
40._RUQ_153
_AAATGGAGGGCCAACCAAATCGX_XX_X

Input profile: LCT_EEN_37_/F RUQ_153

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._LCT_EEN_37_/F RUQ_153

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F

98.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

3._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

5._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

6._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

7._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

9._LCT_EEN_37_/F GC-08-160-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

16._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

17._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

18._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

19._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

20._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

21._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

22._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

23._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

24._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

25._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

26._LCT_EEN_37_/F GC-02-027-4-03

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

27._LCT_EEN_37_/F

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._LCT_EEN_37_/F GC-02-027-4-03

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._LCT_EEN_37_/F

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

30._LCT_EEN_37_/F GC-08-160-4-03

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._LCT_EEN_37_/F

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

32._LCT_EEN_37_/F GC-08-160-4-03

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

33._LCT_EEN_37_/F

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

34._LCT_EEN_37_/F GC-08-160-4-03

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

35._LCT_EEN_37_/F GC-08-160-4-03

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

36._LCT_EEN_37_/F

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

37._LCT_EEN_37_/F

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

38._LCT_EEN_37_/F GC-08-160-4-03

61.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

39._LCT_EEN_37_/F

61.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

40._LCT_EEN_37_/F RUQ_153

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25