SNP Profiles of LCT EEN 73/D   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCTCTCCTTGGTTCCATGGCCAA
1._LCT_EEN_37_/F___
CCGGCGCTCTCCTTGGTTCCATGGCCAA
2._LCT_EEN_37_/F___
__GGCGCTCTCCTTGGTT__ATGGCCAA
3._LCT_EEN_37_/F___
__GGCGCT______GG________CCAA
4._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
5._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
6._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
7._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
8._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
9._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
10._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
11._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
12._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
13._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
14._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
15._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
16._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
17._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
18._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
19._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
20._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
21._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
22._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
23._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
24._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
25._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
26._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
27._LCT_EEN_37_/F___
CCGGCGCTCT__TTGGTTCCATGGCCAA
28._LCT_EEN_37_/F___
CCAGCCCTCT__CTGTCTCCATAGCCAG
29._LCT_EEN_37_/F___
CCAGCCCTCT__CTGTCTCCATAGCCAG
30._LCT_EEN_37_/F___
CCAGCGCTTTCCTTTTCCCCAAAGCCAG
31._LCT_EEN_37_/F___
CCAGCGCTTTCCTTTTCCCCAAAGCCAG
32._LCT_EEN_37_/F___
CTAACGCTCTACCCGTCTCTAAAGCCAG
33._LCT_EEN_37_/F___
CTAACGCTCTACCCGTCTCTAAAGCCAG
34._LCT_EEN_37_/F___
CTAACGCTCTACCCGTCTCTAAAGCCAG
35._LCT_EEN_37_/F___
CTAACGCTCTACCCGTCTCTAAAGCCAG
36._LCT_EEN_37_/F___
CTAACGCTCTACCCGTCTCTAAAGCCAG
37._LCT_EEN_37_/F___
CTAACGCTCTACCCGTCTCTAAAGCCAG
38._LCT_EEN_37_/F___
CTAACGCTCTACCCGTCTCTAAAGCCAG
39._LCT_EEN_37_/F___
CTAACGCTCTACCCGTCTCTAAAGCCAG
40._LCT_EEN_37_/F___
GGGGCGAGAG__AACC____ATGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGTTTTCGGGAATTCCGGGGCCAC
1._LCT_EEN_37_/F___
CTAACGTTTTCGGGAATTCCGGGGCCAC
2._LCT_EEN_37_/F___
CTAACGTTTTCGGGAATTCCGGGGCCAC
3._LCT_EEN_37_/F___
________TTCGGG__TTCCCGGGCCAC
4._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
5._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
6._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
7._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
8._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
9._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
10._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
11._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
12._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
13._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
14._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
15._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
16._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
17._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
18._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
19._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
20._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
21._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
22._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
23._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
24._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
25._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
26._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
27._LCT_EEN_37_/F___
CTAACGTTTTCGGGGGTTCCGGGGCCAC
28._LCT_EEN_37_/F___
CCATCGCTCTCGGTAACTCCCGGTCTAC
29._LCT_EEN_37_/F___
CCATCGCTCTCGGTAACTCCCGGTCTAC
30._LCT_EEN_37_/F___
CCAACGCTCCGGGGGGCTACCGGT__AA
31._LCT_EEN_37_/F___
CCAACGCTCCGGGGGGCTACCGGT__AA
32._LCT_EEN_37_/F___
CTATCGCTCTCGGGAGTTCCCCGTCTAC
33._LCT_EEN_37_/F___
CTATCGCTCTCGGGAGTTCCCCGTCTAC
34._LCT_EEN_37_/F___
CTATCGCTCTCGGGAGTTCCCCGTCTAC
35._LCT_EEN_37_/F___
CTATCGCTCTCGGGAGTTCCCCGTCTAC
36._LCT_EEN_37_/F___
CTATCGCTCTCGGGAGTTCCCCGTCTAC
37._LCT_EEN_37_/F___
CTATCGCTCTCGGGAGTTCCCCGTCTAC
38._LCT_EEN_37_/F___
CTATCGCTCTCGGGAGTT__CCGTCTAC
39._LCT_EEN_37_/F___
CTATCGCTCTCGGGAGTT__CCGTCTAC
40._LCT_EEN_37_/F___
AGAACGAAAACGCC__AACCCGCC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGAAATCCAGCCCCTTGGAAATGGX_XX_X
1._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATGGX_XX_X
2._LCT_EEN_37_/F___
AGAAATCCAG__CCTTGGAAATCGX_XX_X
3._LCT_EEN_37_/F___
AG____CCAGCCCCTTGGAA____X_XX_X
4._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
5._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
6._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
7._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
8._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
9._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
10._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
11._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
12._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
13._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
14._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
15._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
16._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
17._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
18._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
19._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
20._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
21._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
22._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
23._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
24._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
25._LCT_EEN_37_/F___
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
26._LCT_EEN_37_/F___
AGAAATCCAGCCCC__GGAAATCGX_XX_X
27._LCT_EEN_37_/F___
AGAAATCCAGCCCC__GGAAATCGX_XX_X
28._LCT_EEN_37_/F___
GGAGAACTAGCCCCTTGTCCATCGX_XX_X
29._LCT_EEN_37_/F___
GGAGAACTAGCCCCTTGTCCATCGX_XX_X
30._LCT_EEN_37_/F___
GGGGAACCAGCCAATTTTAAATGGX_XX_X
31._LCT_EEN_37_/F___
GGGGAACCAGCCAATTTTAAATGGX_XX_X
32._LCT_EEN_37_/F___
AGGGAACTAACCACCTGTACATCGX_XX_X
33._LCT_EEN_37_/F___
AGGGAACTAACCACCTGTACATCGX_XX_X
34._LCT_EEN_37_/F___
AGGGAACTAACCACCTGTACATCGX_XX_X
35._LCT_EEN_37_/F___
AGGGAACTAACCACCTGTACATCGX_XX_X
36._LCT_EEN_37_/F___
AGGGAACTAACCACCTGTACATCGX_XX_X
37._LCT_EEN_37_/F___
AGGGAACTAACCACCTGTACATCGX_XX_X
38._LCT_EEN_37_/F___
AGGGAACTAACCACCTGTACATCGX_XX_X
39._LCT_EEN_37_/F___
AGGGAACTAACCACCTGTACATCGX_XX_X
40._LCT_EEN_37_/F___
__AAATGGAGGGCCAACCAAATCGX_XX_X

Input profile: LCT_EEN_37_/F RUQ_153

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._LCT_EEN_37_/F RUQ_153

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F

98.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

3._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

5._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

6._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

7._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

9._LCT_EEN_37_/F GC-08-160-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

16._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

17._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

18._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

19._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

20._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

21._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

22._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

23._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

24._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

25._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

26._LCT_EEN_37_/F GC-02-027-4-03

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

27._LCT_EEN_37_/F

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016

28._LCT_EEN_37_/F GC-02-027-4-03

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._LCT_EEN_37_/F

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

30._LCT_EEN_37_/F GC-08-160-4-03

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._LCT_EEN_37_/F

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

32._LCT_EEN_37_/F GC-08-160-4-03

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

33._LCT_EEN_37_/F

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

34._LCT_EEN_37_/F GC-08-160-4-03

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

35._LCT_EEN_37_/F GC-08-160-4-03

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

36._LCT_EEN_37_/F

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

37._LCT_EEN_37_/F

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

38._LCT_EEN_37_/F GC-08-160-4-03

61.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

39._LCT_EEN_37_/F

61.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

40._LCT_EEN_37_/F RUQ_153

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25