SNP Profiles of LCT EEN 37 /F   View Data

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 Key

 1234567891011121314
_Input profile
CCGGCGCTCTTTGGTTCCATGGCCAACT
1._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
2._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
3._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
4._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
5._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
6._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
7._GC-08-160-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
8._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
9._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
10._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
11._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
12._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
13._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
14._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
15._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
16._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
17._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
18._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
19._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
20._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
21._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
22._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
23._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
24._RUQ_153
_GGCGCT__GG____CCAA_
25._LCT_EEN_37_/F
-GGCGCTCTTTGGTT-ATGGCCAACT
26._RUQ_153
CCGGCGCTCTTTGGTTCCATGGCCAACT
27._RUQ_153
CCGGCGCTCTTTGGTTCCATGGCCAACT
28._GC-02-027-4-03
CCAGCCCTCTCTGTCTCCATAGCCAGCC
29._LCT_EEN_37_/F
CCAGCCCTCTCTGTCTCCATAGCCAGCC
30._GC-08-160-4-03
CTAACGCTCTCCGTCTCTAAAGCCAGCT
31._LCT_EEN_37_/F
CTAACGCTCTCCGTCTCTAAAGCCAGCT
32._GC-08-160-4-03
CTAACGCTCTCCGTCTCTAAAGCCAGCT
33._GC-08-160-4-03
CTAACGCTCTCCGTCTCTAAAGCCAGCT
34._LCT_EEN_37_/F
CTAACGCTCTCCGTCTCTAAAGCCAGCT
35._LCT_EEN_37_/F
CTAACGCTCTCCGTCTCTAAAGCCAGCT
36._GC-08-160-4-03
CTAACGCTCTCCGTCTCTAAAGCCAGCT
37._LCT_EEN_37_/F
CTAACGCTCTCCGTCTCTAAAGCCAGCT
38._GC-08-160-4-03
CCAGCGCTTTTTTTCCCCAAAGCCAGCC
39._LCT_EEN_37_/F
CCAGCGCTTTTTTTCCCCAAAGCCAGCC
40._RUQ_153
GGGGCGAGAGAACC__ATGGGGAAAG
 1516171819202122232425262728
_Input profile
AACGTTTTCGGGGGTTCCGGGGCCACAG
1._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
2._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
3._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
4._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
5._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
6._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
7._GC-08-160-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
8._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
9._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
10._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
11._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
12._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
13._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
14._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
15._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
16._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
17._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
18._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
19._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
20._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
21._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
22._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
23._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
24._RUQ_153
___TTCGGG_TTCCCGGGCCACAG
25._LCT_EEN_37_/F
AACGTTTTCGGGAATTCCGGGGCCACAG
26._RUQ_153
AACGTTTTCGGGAATTCCGGGGCCACAG
27._RUQ_153
AACGTTTTCGGGAATTCCGGGGCCACAG
28._GC-02-027-4-03
ATCGCTCTCGGTAACTCCCGGTCTACGG
29._LCT_EEN_37_/F
ATCGCTCTCGGTAACTCCCGGTCTACGG
30._GC-08-160-4-03
ATCGCTCTCGGGAGTTCCCCGTCTACAG
31._LCT_EEN_37_/F
ATCGCTCTCGGGAGTTCCCCGTCTACAG
32._GC-08-160-4-03
ATCGCTCTCGGGAGTTCCCCGTCTACAG
33._GC-08-160-4-03
ATCGCTCTCGGGAGTTCCCCGTCTACAG
34._LCT_EEN_37_/F
ATCGCTCTCGGGAGTTCCCCGTCTACAG
35._LCT_EEN_37_/F
ATCGCTCTCGGGAGTTCCCCGTCTACAG
36._GC-08-160-4-03
ATCGCTCTCGGGAGTT_CCGTCTACAG
37._LCT_EEN_37_/F
ATCGCTCTCGGGAGTT_CCGTCTACAG
38._GC-08-160-4-03
AACGCTCCGGGGGGCTACCGGT_AAGG
39._LCT_EEN_37_/F
AACGCTCCGGGGGGCTACCGGT_AAGG
40._RUQ_153
AACGAAAACGCC_AACCCGCC_AC_
 29303132333435363738    
_Input profile
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
1._GC-02-027-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
2._GC-02-027-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
3._GC-02-027-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
4._GC-02-027-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
5._GC-02-027-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
6._GC-02-027-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
7._GC-08-160-4-03
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
8._GC-08-161-4-04
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
9._GC-08-161-4-04
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
10._GC-08-161-4-04
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
11._GC-08-161-4-04
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
12._GC-08-161-4-04
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
13._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
14._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
15._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
16._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
17._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
18._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
19._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
20._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
21._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
22._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
23._LCT_EEN_37_/F
AAATCCAGCCCCGGAAATCGX_XX_XX_XX_X
24._RUQ_153
_-CCAGCCCCGGAA__X_XX_XX_XX_X
25._LCT_EEN_37_/F
AAATCCAG-CCGGAAATCGX_XX_XX_XX_X
26._RUQ_153
AAATCCAGCCCCGGAAATGGX_XX_XX_XX_X
27._RUQ_153
AAATCCAGCCCCGGAAATGGX_XX_XX_XX_X
28._GC-02-027-4-03
AGAACTAGCCCCGTCCATCGX_XX_XX_XX_X
29._LCT_EEN_37_/F
AGAACTAGCCCCGTCCATCGX_XX_XX_XX_X
30._GC-08-160-4-03
GGAACTAACCACGTACATCGX_XX_XX_XX_X
31._LCT_EEN_37_/F
GGAACTAACCACGTACATCGX_XX_XX_XX_X
32._GC-08-160-4-03
GGAACTAACCACGTACATCGX_XX_XX_XX_X
33._GC-08-160-4-03
GGAACTAACCACGTACATCGX_XX_XX_XX_X
34._LCT_EEN_37_/F
GGAACTAACCACGTACATCGX_XX_XX_XX_X
35._LCT_EEN_37_/F
GGAACTAACCACGTACATCGX_XX_XX_XX_X
36._GC-08-160-4-03
GGAACTAACCACGTACATCGX_XX_XX_XX_X
37._LCT_EEN_37_/F
GGAACTAACCACGTACATCGX_XX_XX_XX_X
38._GC-08-160-4-03
GGAACCAGCCAATTAAATGGX_XX_XX_XX_X
39._LCT_EEN_37_/F
GGAACCAGCCAATTAAATGGX_XX_XX_XX_X
40._RUQ_153
AAATGGAGGGCCCCAAATCGX_XX_XX_XX_X

Input profile: LCT_EEN_37_/F

 
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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._LCT_EEN_37_/F GC-02-027-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

2._LCT_EEN_37_/F GC-02-027-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._LCT_EEN_37_/F GC-02-027-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

4._LCT_EEN_37_/F GC-02-027-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

5._LCT_EEN_37_/F GC-02-027-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

6._LCT_EEN_37_/F GC-02-027-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

7._LCT_EEN_37_/F GC-08-160-4-03

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._LCT_EEN_37_/F GC-08-161-4-04

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._LCT_EEN_37_/F GC-08-161-4-04

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._LCT_EEN_37_/F GC-08-161-4-04

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._LCT_EEN_37_/F GC-08-161-4-04

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

12._LCT_EEN_37_/F GC-08-161-4-04

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

13._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

14._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

15._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

16._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

17._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

18._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

19._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

20._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

21._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

22._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

23._LCT_EEN_37_/F

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

24._LCT_EEN_37_/F RUQ_153

97.7 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._LCT_EEN_37_/F

97.1 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

26._LCT_EEN_37_/F RUQ_153

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

27._LCT_EEN_37_/F RUQ_153

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._LCT_EEN_37_/F GC-02-027-4-03

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._LCT_EEN_37_/F

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

30._LCT_EEN_37_/F GC-08-160-4-03

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

31._LCT_EEN_37_/F

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

32._LCT_EEN_37_/F GC-08-160-4-03

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._LCT_EEN_37_/F GC-08-160-4-03

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

34._LCT_EEN_37_/F

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

35._LCT_EEN_37_/F

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

36._LCT_EEN_37_/F GC-08-160-4-03

63.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

37._LCT_EEN_37_/F

63.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

38._LCT_EEN_37_/F GC-08-160-4-03

62.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

39._LCT_EEN_37_/F

62.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

40._LCT_EEN_37_/F RUQ_153

53 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25