SNP Profiles of LCT EEN 37 /F   View Data

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 1234567891011121314
_Input profile
CCAGCCCTCTCTGTCTCCATAGCCAGCC
1._GC-02-027-4-03
CCAGCCCTCTCTGTCTCCATAGCCAGCC
2._GC-08-160-4-03
CTAACGCTCTCCGTCTCTAAAGCCAGCT
3._LCT_EEN_37_/F
CTAACGCTCTCCGTCTCTAAAGCCAGCT
4._GC-08-160-4-03
CTAACGCTCTCCGTCTCTAAAGCCAGCT
5._GC-08-160-4-03
CTAACGCTCTCCGTCTCTAAAGCCAGCT
6._LCT_EEN_37_/F
CTAACGCTCTCCGTCTCTAAAGCCAGCT
7._LCT_EEN_37_/F
CTAACGCTCTCCGTCTCTAAAGCCAGCT
8._GC-08-160-4-03
CTAACGCTCTCCGTCTCTAAAGCCAGCT
9._LCT_EEN_37_/F
CTAACGCTCTCCGTCTCTAAAGCCAGCT
10._GC-08-160-4-03
CCAGCGCTTTTTTTCCCCAAAGCCAGCC
11._LCT_EEN_37_/F
CCAGCGCTTTTTTTCCCCAAAGCCAGCC
12._RUQ_153
_GGCGCT__GG____CCAA_
13._RUQ_153
CCGGCGCTCTTTGGTTCCATGGCCAACT
14._RUQ_153
CCGGCGCTCTTTGGTTCCATGGCCAACT
15._LCT_EEN_37_/F
-GGCGCTCTTTGGTT-ATGGCCAACT
16._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
17._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
18._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
19._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
20._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
21._GC-08-160-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
22._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
23._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
24._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
25._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
26._GC-08-161-4-04
CCGGCGCTCTTTGGTTCCATGGCCAACT
27._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
28._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
29._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
30._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
31._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
32._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
33._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
34._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
35._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
36._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
37._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
38._GC-02-027-4-03
CCGGCGCTCTTTGGTTCCATGGCCAACT
39._LCT_EEN_37_/F
CCGGCGCTCTTTGGTTCCATGGCCAACT
40._RUQ_153
GGGGCGAGAGAACC__ATGGGGAAAG
 1516171819202122232425262728
_Input profile
ATCGCTCTCGGTAACTCCCGGTCTACGG
1._GC-02-027-4-03
ATCGCTCTCGGTAACTCCCGGTCTACGG
2._GC-08-160-4-03
ATCGCTCTCGGGAGTTCCCCGTCTACAG
3._LCT_EEN_37_/F
ATCGCTCTCGGGAGTTCCCCGTCTACAG
4._GC-08-160-4-03
ATCGCTCTCGGGAGTTCCCCGTCTACAG
5._GC-08-160-4-03
ATCGCTCTCGGGAGTTCCCCGTCTACAG
6._LCT_EEN_37_/F
ATCGCTCTCGGGAGTTCCCCGTCTACAG
7._LCT_EEN_37_/F
ATCGCTCTCGGGAGTTCCCCGTCTACAG
8._GC-08-160-4-03
ATCGCTCTCGGGAGTT_CCGTCTACAG
9._LCT_EEN_37_/F
ATCGCTCTCGGGAGTT_CCGTCTACAG
10._GC-08-160-4-03
AACGCTCCGGGGGGCTACCGGT_AAGG
11._LCT_EEN_37_/F
AACGCTCCGGGGGGCTACCGGT_AAGG
12._RUQ_153
___TTCGGG_TTCCCGGGCCACAG
13._RUQ_153
AACGTTTTCGGGAATTCCGGGGCCACAG
14._RUQ_153
AACGTTTTCGGGAATTCCGGGGCCACAG
15._LCT_EEN_37_/F
AACGTTTTCGGGAATTCCGGGGCCACAG
16._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
17._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
18._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
19._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
20._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
21._GC-08-160-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
22._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
23._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
24._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
25._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
26._GC-08-161-4-04
AACGTTTTCGGGGGTTCCGGGGCCACAG
27._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
28._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
29._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
30._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
31._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
32._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
33._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
34._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
35._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
36._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
37._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
38._GC-02-027-4-03
AACGTTTTCGGGGGTTCCGGGGCCACAG
39._LCT_EEN_37_/F
AACGTTTTCGGGGGTTCCGGGGCCACAG
40._RUQ_153
AACGAAAACGCC_AACCCGCC_AC_
 2930313233343536373839   
_Input profile
AGAACTAGCCCCTTGTCCATCGX_XX_XX_X
1._GC-02-027-4-03
AGAACTAGCCCCTTGTCCATCGX_XX_XX_X
2._GC-08-160-4-03
GGAACTAACCACCTGTACATCGX_XX_XX_X
3._LCT_EEN_37_/F
GGAACTAACCACCTGTACATCGX_XX_XX_X
4._GC-08-160-4-03
GGAACTAACCACCTGTACATCGX_XX_XX_X
5._GC-08-160-4-03
GGAACTAACCACCTGTACATCGX_XX_XX_X
6._LCT_EEN_37_/F
GGAACTAACCACCTGTACATCGX_XX_XX_X
7._LCT_EEN_37_/F
GGAACTAACCACCTGTACATCGX_XX_XX_X
8._GC-08-160-4-03
GGAACTAACCACCTGTACATCGX_XX_XX_X
9._LCT_EEN_37_/F
GGAACTAACCACCTGTACATCGX_XX_XX_X
10._GC-08-160-4-03
GGAACCAGCCAATTTTAAATGGX_XX_XX_X
11._LCT_EEN_37_/F
GGAACCAGCCAATTTTAAATGGX_XX_XX_X
12._RUQ_153
_-CCAGCCCCTTGGAA__X_XX_XX_X
13._RUQ_153
AAATCCAGCCCCTTGGAAATGGX_XX_XX_X
14._RUQ_153
AAATCCAGCCCCTTGGAAATGGX_XX_XX_X
15._LCT_EEN_37_/F
AAATCCAG-CCTTGGAAATCGX_XX_XX_X
16._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
17._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
18._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
19._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
20._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
21._GC-08-160-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
22._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
23._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
24._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
25._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
26._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
27._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
28._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
29._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
30._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
31._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
32._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
33._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
34._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
35._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
36._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
37._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
38._GC-02-027-4-03
AAATCCAGCCCC_GGAAATCGX_XX_XX_X
39._LCT_EEN_37_/F
AAATCCAGCCCC_GGAAATCGX_XX_XX_X
40._RUQ_153
AAATGGAGGGCCAACCAAATCGX_XX_XX_X

Input profile: LCT_EEN_37_/F

 
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Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

1._LCT_EEN_37_/F GC-02-027-4-03

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._LCT_EEN_37_/F GC-08-160-4-03

78.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._LCT_EEN_37_/F

78.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

4._LCT_EEN_37_/F GC-08-160-4-03

78.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._LCT_EEN_37_/F GC-08-160-4-03

78.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._LCT_EEN_37_/F

78.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

7._LCT_EEN_37_/F

78.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F GC-08-160-4-03

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._LCT_EEN_37_/F

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

10._LCT_EEN_37_/F GC-08-160-4-03

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._LCT_EEN_37_/F

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

12._LCT_EEN_37_/F RUQ_153

69.6 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._LCT_EEN_37_/F RUQ_153

69.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._LCT_EEN_37_/F RUQ_153

69.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._LCT_EEN_37_/F

68.1 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

16._LCT_EEN_37_/F GC-02-027-4-03

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

17._LCT_EEN_37_/F GC-02-027-4-03

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

18._LCT_EEN_37_/F GC-02-027-4-03

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

19._LCT_EEN_37_/F GC-02-027-4-03

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._LCT_EEN_37_/F GC-02-027-4-03

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

21._LCT_EEN_37_/F GC-08-160-4-03

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

22._LCT_EEN_37_/F GC-08-161-4-04

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._LCT_EEN_37_/F GC-08-161-4-04

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._LCT_EEN_37_/F GC-08-161-4-04

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._LCT_EEN_37_/F GC-08-161-4-04

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._LCT_EEN_37_/F

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

28._LCT_EEN_37_/F

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

29._LCT_EEN_37_/F

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

30._LCT_EEN_37_/F

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

31._LCT_EEN_37_/F

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

32._LCT_EEN_37_/F

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

33._LCT_EEN_37_/F

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

34._LCT_EEN_37_/F

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

35._LCT_EEN_37_/F

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

36._LCT_EEN_37_/F

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

37._LCT_EEN_37_/F

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

38._LCT_EEN_37_/F GC-02-027-4-03

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

39._LCT_EEN_37_/F

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

40._LCT_EEN_37_/F RUQ_153

39.7 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25