SNP Profiles of LCT EEN 37 /F   View Data

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 Key

 1234567891011121314
_Input profile
CTAACGCTCTACCCGTCTCTAAAGCCAG
1._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
2._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
3._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
4._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
5._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
6._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
7._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
8._GC-02-027-4-03
CCAGCCCTCT_CTGTCTCCATAGCCAG
9._LCT_EEN_37_/F
CCAGCCCTCT_CTGTCTCCATAGCCAG
10._RUQ_153
_GGCGCT___GG____CCAA
11._GC-08-160-4-03
CCAGCGCTTTCCTTTTCCCCAAAGCCAG
12._LCT_EEN_37_/F
CCAGCGCTTTCCTTTTCCCCAAAGCCAG
13._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
14._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
15._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
16._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
17._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
18._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
19._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
20._GC-08-160-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
21._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
22._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
23._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
24._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
25._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
26._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
27._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
28._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
29._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
30._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
31._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
32._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
33._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
34._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
35._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
36._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
37._LCT_EEN_37_/F
-GGCGCTCTCCTTGGTT-ATGGCCAA
38._RUQ_153
CCGGCGCTCTCCTTGGTTCCATGGCCAA
39._RUQ_153
CCGGCGCTCTCCTTGGTTCCATGGCCAA
40._RUQ_153
GGGGCGAGAG_AACC__ATGGGGAA
 1516171819202122232425262728
_Input profile
CTATCGCTCTCGGGAGTTCCGTCTACAG
1._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCGTCTACAG
2._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCGTCTACAG
3._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTTCCGTCTACAG
4._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCGTCTACAG
5._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCGTCTACAG
6._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTTCCGTCTACAG
7._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTTCCGTCTACAG
8._GC-02-027-4-03
CCATCGCTCTCGGTAACTCGGTCTACGG
9._LCT_EEN_37_/F
CCATCGCTCTCGGTAACTCGGTCTACGG
10._RUQ_153
____TTCGGG_TTCGGGCCACAG
11._GC-08-160-4-03
CCAACGCTCCGGGGGGCTCGGT_AAGG
12._LCT_EEN_37_/F
CCAACGCTCCGGGGGGCTCGGT_AAGG
13._GC-02-027-4-03
CTAACGTTTTCGGGGGTTGGGGCCACAG
14._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTGGGGCCACAG
15._GC-02-027-4-03
CTAACGTTTTCGGGGGTTGGGGCCACAG
16._GC-02-027-4-03
CTAACGTTTTCGGGGGTTGGGGCCACAG
17._GC-02-027-4-03
CTAACGTTTTCGGGGGTTGGGGCCACAG
18._GC-02-027-4-03
CTAACGTTTTCGGGGGTTGGGGCCACAG
19._GC-02-027-4-03
CTAACGTTTTCGGGGGTTGGGGCCACAG
20._GC-08-160-4-03
CTAACGTTTTCGGGGGTTGGGGCCACAG
21._GC-08-161-4-04
CTAACGTTTTCGGGGGTTGGGGCCACAG
22._GC-08-161-4-04
CTAACGTTTTCGGGGGTTGGGGCCACAG
23._GC-08-161-4-04
CTAACGTTTTCGGGGGTTGGGGCCACAG
24._GC-08-161-4-04
CTAACGTTTTCGGGGGTTGGGGCCACAG
25._GC-08-161-4-04
CTAACGTTTTCGGGGGTTGGGGCCACAG
26._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTGGGGCCACAG
27._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTGGGGCCACAG
28._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTGGGGCCACAG
29._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTGGGGCCACAG
30._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTGGGGCCACAG
31._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTGGGGCCACAG
32._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTGGGGCCACAG
33._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTGGGGCCACAG
34._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTGGGGCCACAG
35._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTGGGGCCACAG
36._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTGGGGCCACAG
37._LCT_EEN_37_/F
CTAACGTTTTCGGGAATTGGGGCCACAG
38._RUQ_153
CTAACGTTTTCGGGAATTGGGGCCACAG
39._RUQ_153
CTAACGTTTTCGGGAATTGGGGCCACAG
40._RUQ_153
AGAACGAAAACGCC_AACGCC_AC_
 2930313233343536373839   
_Input profile
GGAACTAACCACCTGTACATCGX_XX_XX_X
1._GC-08-160-4-03
GGAACTAACCACCTGTACATCGX_XX_XX_X
2._GC-08-160-4-03
GGAACTAACCACCTGTACATCGX_XX_XX_X
3._LCT_EEN_37_/F
GGAACTAACCACCTGTACATCGX_XX_XX_X
4._GC-08-160-4-03
GGAACTAACCACCTGTACATCGX_XX_XX_X
5._GC-08-160-4-03
GGAACTAACCACCTGTACATCGX_XX_XX_X
6._LCT_EEN_37_/F
GGAACTAACCACCTGTACATCGX_XX_XX_X
7._LCT_EEN_37_/F
GGAACTAACCACCTGTACATCGX_XX_XX_X
8._GC-02-027-4-03
AGAACTAGCCCCTTGTCCATCGX_XX_XX_X
9._LCT_EEN_37_/F
AGAACTAGCCCCTTGTCCATCGX_XX_XX_X
10._RUQ_153
_-CCAGCCCCTTGGAA__X_XX_XX_X
11._GC-08-160-4-03
GGAACCAGCCAATTTTAAATGGX_XX_XX_X
12._LCT_EEN_37_/F
GGAACCAGCCAATTTTAAATGGX_XX_XX_X
13._GC-02-027-4-03
AAATCCAGCCCC_GGAAATCGX_XX_XX_X
14._LCT_EEN_37_/F
AAATCCAGCCCC_GGAAATCGX_XX_XX_X
15._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
16._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
17._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
18._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
19._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
20._GC-08-160-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
21._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
22._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
23._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
24._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
25._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
26._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
27._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
28._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
29._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
30._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
31._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
32._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
33._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
34._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
35._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
36._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
37._LCT_EEN_37_/F
AAATCCAG-CCTTGGAAATCGX_XX_XX_X
38._RUQ_153
AAATCCAGCCCCTTGGAAATGGX_XX_XX_X
39._RUQ_153
AAATCCAGCCCCTTGGAAATGGX_XX_XX_X
40._RUQ_153
AAATGGAGGGCCAACCAAATCGX_XX_XX_X

Input profile: LCT_EEN_37_/F

 
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Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

1._LCT_EEN_37_/F GC-08-160-4-03

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._LCT_EEN_37_/F GC-08-160-4-03

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._LCT_EEN_37_/F

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

4._LCT_EEN_37_/F GC-08-160-4-03

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._LCT_EEN_37_/F GC-08-160-4-03

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._LCT_EEN_37_/F

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

7._LCT_EEN_37_/F

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F GC-02-027-4-03

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._LCT_EEN_37_/F

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

10._LCT_EEN_37_/F RUQ_153

68.2 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._LCT_EEN_37_/F GC-08-160-4-03

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._LCT_EEN_37_/F

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

13._LCT_EEN_37_/F GC-02-027-4-03

63.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._LCT_EEN_37_/F

63.5 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

15._LCT_EEN_37_/F GC-02-027-4-03

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

16._LCT_EEN_37_/F GC-02-027-4-03

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

17._LCT_EEN_37_/F GC-02-027-4-03

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

18._LCT_EEN_37_/F GC-02-027-4-03

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

19._LCT_EEN_37_/F GC-02-027-4-03

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

20._LCT_EEN_37_/F GC-08-160-4-03

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

21._LCT_EEN_37_/F GC-08-161-4-04

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._LCT_EEN_37_/F GC-08-161-4-04

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._LCT_EEN_37_/F GC-08-161-4-04

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._LCT_EEN_37_/F GC-08-161-4-04

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

26._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

27._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

28._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

29._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

30._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

31._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

32._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

33._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

34._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

35._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

36._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

37._LCT_EEN_37_/F

62.5 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

38._LCT_EEN_37_/F RUQ_153

61.5 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

39._LCT_EEN_37_/F RUQ_153

61.5 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

40._LCT_EEN_37_/F RUQ_153

31.8 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25