SNP Profiles of LCT EEN 37 /F   View Data

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 1234567891011121314
_Input profile
CTAACGCTCTACCCGTCTCTAAAGCCAG
1._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
2._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
3._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
4._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
5._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
6._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
7._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
8._GC-02-027-4-03
CCAGCCCTCT_CTGTCTCCATAGCCAG
9._LCT_EEN_37_/F
CCAGCCCTCT_CTGTCTCCATAGCCAG
10._RUQ_153
_GGCGCT___GG____CCAA
11._GC-08-160-4-03
CCAGCGCTTTCCTTTTCCCCAAAGCCAG
12._LCT_EEN_37_/F
CCAGCGCTTTCCTTTTCCCCAAAGCCAG
13._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
14._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
15._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
16._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
17._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
18._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
19._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
20._GC-08-160-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
21._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
22._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
23._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
24._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
25._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
26._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
27._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
28._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
29._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
30._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
31._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
32._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
33._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
34._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
35._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
36._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
37._LCT_EEN_37_/F
-GGCGCTCTCCTTGGTT-ATGGCCAA
38._RUQ_153
CCGGCGCTCTCCTTGGTTCCATGGCCAA
39._RUQ_153
CCGGCGCTCTCCTTGGTTCCATGGCCAA
40._RUQ_153
GGGGCGAGAG_AACC__ATGGGGAA
 1516171819202122232425262728
_Input profile
CTATCGCTCTCGGGAGTTCCCCGTCTAC
1._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCCCGTCTAC
2._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTTCCCCGTCTAC
3._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCCCGTCTAC
4._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCCCGTCTAC
5._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTTCCCCGTCTAC
6._GC-08-160-4-03
CTATCGCTCTCGGGAGTT_CCGTCTAC
7._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTT_CCGTCTAC
8._GC-02-027-4-03
CCATCGCTCTCGGTAACTCCCGGTCTAC
9._LCT_EEN_37_/F
CCATCGCTCTCGGTAACTCCCGGTCTAC
10._RUQ_153
____TTCGGG_TTCCCGGGCCAC
11._GC-08-160-4-03
CCAACGCTCCGGGGGGCTACCGGT_AA
12._LCT_EEN_37_/F
CCAACGCTCCGGGGGGCTACCGGT_AA
13._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
14._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
15._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
16._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
17._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
18._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
19._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
20._GC-08-160-4-03
CTAACGTTTTCGGGGGTTCCGGGGCCAC
21._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
22._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
23._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
24._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
25._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGCCAC
26._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
27._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
28._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
29._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
30._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
31._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
32._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
33._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
34._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
35._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
36._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGCCAC
37._LCT_EEN_37_/F
CTAACGTTTTCGGGAATTCCGGGGCCAC
38._RUQ_153
CTAACGTTTTCGGGAATTCCGGGGCCAC
39._RUQ_153
CTAACGTTTTCGGGAATTCCGGGGCCAC
40._RUQ_153
AGAACGAAAACGCC_AACCCGCC_AC
 293031323334353637383940  
_Input profile
AGGGAACTAACCACCTGTACATCGX_XX_X
1._GC-08-160-4-03
AGGGAACTAACCACCTGTACATCGX_XX_X
2._LCT_EEN_37_/F
AGGGAACTAACCACCTGTACATCGX_XX_X
3._GC-08-160-4-03
AGGGAACTAACCACCTGTACATCGX_XX_X
4._GC-08-160-4-03
AGGGAACTAACCACCTGTACATCGX_XX_X
5._LCT_EEN_37_/F
AGGGAACTAACCACCTGTACATCGX_XX_X
6._GC-08-160-4-03
AGGGAACTAACCACCTGTACATCGX_XX_X
7._LCT_EEN_37_/F
AGGGAACTAACCACCTGTACATCGX_XX_X
8._GC-02-027-4-03
GGAGAACTAGCCCCTTGTCCATCGX_XX_X
9._LCT_EEN_37_/F
GGAGAACTAGCCCCTTGTCCATCGX_XX_X
10._RUQ_153
AG_-CCAGCCCCTTGGAA__X_XX_X
11._GC-08-160-4-03
GGGGAACCAGCCAATTTTAAATGGX_XX_X
12._LCT_EEN_37_/F
GGGGAACCAGCCAATTTTAAATGGX_XX_X
13._GC-02-027-4-03
AGAAATCCAGCCCC_GGAAATCGX_XX_X
14._LCT_EEN_37_/F
AGAAATCCAGCCCC_GGAAATCGX_XX_X
15._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
16._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
17._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
18._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
19._GC-02-027-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
20._GC-08-160-4-03
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
21._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
22._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
23._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
24._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
25._GC-08-161-4-04
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
26._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
27._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
28._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
29._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
30._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
31._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
32._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
33._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
34._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
35._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
36._LCT_EEN_37_/F
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
37._LCT_EEN_37_/F
AGAAATCCAG-CCTTGGAAATCGX_XX_X
38._RUQ_153
AGAAATCCAGCCCCTTGGAAATGGX_XX_X
39._RUQ_153
AGAAATCCAGCCCCTTGGAAATGGX_XX_X
40._RUQ_153
_AAATGGAGGGCCAACCAAATCGX_XX_X

Input profile: LCT_EEN_37_/F

 
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Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

1._LCT_EEN_37_/F GC-08-160-4-03

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._LCT_EEN_37_/F

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

3._LCT_EEN_37_/F GC-08-160-4-03

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._LCT_EEN_37_/F GC-08-160-4-03

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._LCT_EEN_37_/F

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

6._LCT_EEN_37_/F GC-08-160-4-03

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._LCT_EEN_37_/F

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F GC-02-027-4-03

78.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._LCT_EEN_37_/F

78.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

10._LCT_EEN_37_/F RUQ_153

69.6 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._LCT_EEN_37_/F GC-08-160-4-03

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._LCT_EEN_37_/F

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

13._LCT_EEN_37_/F GC-02-027-4-03

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._LCT_EEN_37_/F

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

15._LCT_EEN_37_/F GC-02-027-4-03

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

16._LCT_EEN_37_/F GC-02-027-4-03

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

17._LCT_EEN_37_/F GC-02-027-4-03

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

18._LCT_EEN_37_/F GC-02-027-4-03

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

19._LCT_EEN_37_/F GC-02-027-4-03

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

20._LCT_EEN_37_/F GC-08-160-4-03

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

21._LCT_EEN_37_/F GC-08-161-4-04

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._LCT_EEN_37_/F GC-08-161-4-04

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._LCT_EEN_37_/F GC-08-161-4-04

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._LCT_EEN_37_/F GC-08-161-4-04

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

26._LCT_EEN_37_/F

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

27._LCT_EEN_37_/F

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

28._LCT_EEN_37_/F

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

29._LCT_EEN_37_/F

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

30._LCT_EEN_37_/F

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

31._LCT_EEN_37_/F

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

32._LCT_EEN_37_/F

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

33._LCT_EEN_37_/F

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

34._LCT_EEN_37_/F

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

35._LCT_EEN_37_/F

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

36._LCT_EEN_37_/F

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

37._LCT_EEN_37_/F

63.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

38._LCT_EEN_37_/F RUQ_153

62.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

39._LCT_EEN_37_/F RUQ_153

62.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

40._LCT_EEN_37_/F RUQ_153

33.8 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25