SNP Profiles of LCTEEN 37/I   View Data

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 Key

 1234567891011121314
_Input profile
CCGGCCTTCTACCTGGTTCCAAGGCCAA
1._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAAGGCCAA
2._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
3._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
4._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
5._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
6._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
7._GC-04-004-1-04
CCGGCCTTCTACCTGGTTCCAAGGCCAA
8._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAAGGCCAA
9._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAAGGCCAA
10._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
11._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
12._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
13._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
14._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
15._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
16._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
17._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
18._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
19._GC-08-218-6-14
CCGGCCTTCTACCTGGTTCCAAGGCCAA
20._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
21._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
22._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
23._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
24._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
25._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
26._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
27._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
28._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
29._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
30._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
31._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
32._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
33._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
34._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
35._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
36._RUQ_156
CCGGCCTTCTACCTGGTTCCAAGGCCAA
37._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAA_CCAA
38._GC-08-217-6-13
CCGGCCTTCTACCTGGTTCCAAGGCCAA
39._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAAGGCCAA
40._LCT_EEN_37_/I
CCGGCCTTCTACCTGGTTCCAA_CCAA
41._RUQ_156
__CC____GG_CC_GG_AA
42._RUQ_156
_GGCCTT___GG____CCAA
43._GC-08-217-6-13
CCAGCGCTCTACCCGGTTCTAAAGCTAA
44._LCT_EEN_37_/I
CCAGCGCTCTACCCGGTTCTAAAGCTAA
45._RUQ_156
GGGGGGAAAGACAGCC__AAGGGGAA
 1516171819202122232425262728
_Input profile
CTATGGCTTTCCGTTTCCGGGGCCAAAG
1._GC-08-217-6-13
CTATGGCTTTCCGTTTCCGGGGCCAAAG
2._GC-08-218-6-14
CTATGGCTTTCCGTTTCCGGGGCCAAAG
3._GC-04-004-1-04
CTATGGCTTTCCGTTTCCGGGGCCAAAG
4._GC-04-004-1-04
CTATGGCTTTCCGTTTCCGGGGCCAAAG
5._GC-04-004-1-04
CTATGGCTTTCCGTTTCCGGGGCCAAAG
6._GC-04-004-1-04
CTATGGCTTTCCGTTTCCGGGGCCAAAG
7._GC-04-004-1-04
CTATGGCTTTCCGTTTCCGGGGCCAAAG
8._GC-08-217-6-13
CTATGGCTTTCCGTTTCCGGGGCCAAAG
9._GC-08-217-6-13
CTATGGCTTTCCGTTTCCGGGGCCAAAG
10._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
11._GC-08-218-6-14
CTATGGCTTTCCGTTTCCGGGGCCAAAG
12._GC-08-218-6-14
CTATGGCTTTCCGTTTCCGGGGCCAAAG
13._GC-08-218-6-14
CTATGGCTTTCCGTTTCCGGGGCCAAAG
14._GC-08-218-6-14
CTATGGCTTTCCGTTTCCGGGGCCAAAG
15._GC-08-218-6-14
CTATGGCTTTCCGTTTCCGGGGCCAAAG
16._GC-08-218-6-14
CTATGGCTTTCCGTTTCCGGGGCCAAAG
17._GC-08-218-6-14
CTATGGCTTTCCGTTTCCGGGGCCAAAG
18._GC-08-218-6-14
CTATGGCTTTCCGTTTCCGGGGCCAAAG
19._GC-08-218-6-14
CTATGGCTTTCCGTTTCCGGGGCCAAAG
20._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
21._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
22._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
23._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
24._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
25._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
26._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
27._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
28._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
29._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
30._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
31._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
32._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
33._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
34._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
35._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
36._RUQ_156
CTATGGCTTTCCGTTTCCGGGGCCAAAG
37._GC-08-217-6-13
CTATGGCTTTCCGTTTCCGGGGCCAAAG
38._GC-08-217-6-13
CTATGGCTTTCCGTTTCCGGGGCCAAAG
39._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
40._LCT_EEN_37_/I
CTATGGCTTTCCGTTTCCGGGGCCAAAG
41._RUQ_156
_____CCGT_CC___AA_
42._RUQ_156
____TTCCGTTTCCCGGGCCAAAG
43._GC-08-217-6-13
CTATCGCTCTCGGTCTCCCCGGCCAAAG
44._LCT_EEN_37_/I
CTATCGCTCTCGGTCTCCCCGGCCAAAG
45._RUQ_156
AGATGGAGAAGGACAACCCGCC_AA_
 2930313233343536373839   
_Input profile
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
1._GC-08-217-6-13
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
2._GC-08-218-6-14
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
3._GC-04-004-1-04
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
4._GC-04-004-1-04
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
5._GC-04-004-1-04
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
6._GC-04-004-1-04
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
7._GC-04-004-1-04
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
8._GC-08-217-6-13
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
9._GC-08-217-6-13
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
10._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
11._GC-08-218-6-14
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
12._GC-08-218-6-14
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
13._GC-08-218-6-14
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
14._GC-08-218-6-14
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
15._GC-08-218-6-14
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
16._GC-08-218-6-14
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
17._GC-08-218-6-14
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
18._GC-08-218-6-14
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
19._GC-08-218-6-14
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
20._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
21._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
22._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
23._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
24._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
25._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
26._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
27._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
28._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
29._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
30._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
31._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
32._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
33._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
34._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
35._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
36._RUQ_156
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
37._GC-08-217-6-13
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
38._GC-08-217-6-13
AAATCCAG_CCTTGGACATGGX_XX_XX_X
39._LCT_EEN_37_/I
AAATCCAG_CCTTGGACATGGX_XX_XX_X
40._LCT_EEN_37_/I
AAATCCAGCCCCTTGGACATGGX_XX_XX_X
41._RUQ_156
___AG____AC__X_XX_XX_X
42._RUQ_156
_ATCCAGCCCCTTGGAC__X_XX_XX_X
43._GC-08-217-6-13
AGAACCAGCCCCCTGTCCAACGX_XX_XX_X
44._LCT_EEN_37_/I
AGAACCAGCCCCCTGTCCAACGX_XX_XX_X
45._RUQ_156
AAATGGAGGGCCAACC_ATGGX_XX_XX_X

Input profile: LCT_EEN_37_/I

 
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Mars Center for Cocoa Science, Brazil
Location: 8614 8
 Dapeng Zhang, 2016

1._LCT_EEN_37_/I GC-08-217-6-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

2._LCT_EEN_37_/I GC-08-218-6-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._LCT_EEN_37_/I GC-04-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

4._LCT_EEN_37_/I GC-04-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

5._LCT_EEN_37_/I GC-04-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._LCT_EEN_37_/I GC-04-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

7._LCT_EEN_37_/I GC-04-004-1-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

8._LCT_EEN_37_/I GC-08-217-6-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._LCT_EEN_37_/I GC-08-217-6-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 10
 Dapeng Zhang, 2016

11._LCT_EEN_37_/I GC-08-218-6-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._LCT_EEN_37_/I GC-08-218-6-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._LCT_EEN_37_/I GC-08-218-6-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._LCT_EEN_37_/I GC-08-218-6-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._LCT_EEN_37_/I GC-08-218-6-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._LCT_EEN_37_/I GC-08-218-6-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._LCT_EEN_37_/I GC-08-218-6-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._LCT_EEN_37_/I GC-08-218-6-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._LCT_EEN_37_/I GC-08-218-6-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

20._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 6
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

21._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 9
 Dapeng Zhang, 2016

22._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 7
 Dapeng Zhang, 2016

23._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 6
 Dapeng Zhang, 2016

24._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 5
 Dapeng Zhang, 2016

25._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 4
 Dapeng Zhang, 2016

26._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 3
 Dapeng Zhang, 2016

27._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 2
 Dapeng Zhang, 2016

28._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8614 1
 Dapeng Zhang, 2016

29._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 9
 Dapeng Zhang, 2016

30._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 2
 Dapeng Zhang, 2016

31._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 1
 Dapeng Zhang, 2016

32._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 8 > FP
 Dapeng Zhang, 2016

33._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 7 > FP
 Dapeng Zhang, 2016

34._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 5 > FP
 Dapeng Zhang, 2016

35._LCT_EEN_37_/I

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4104 4 > FP
 Dapeng Zhang, 2016

36._LCT_EEN_37_/I RUQ_156

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

37._LCT_EEN_37_/I GC-08-217-6-13

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

38._LCT_EEN_37_/I GC-08-217-6-13

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

39._LCT_EEN_37_/I

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 10
 Dapeng Zhang, 2016

40._LCT_EEN_37_/I

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 6
 Dapeng Zhang, 2016

41._LCT_EEN_37_/I RUQ_156

identical
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

42._LCT_EEN_37_/I RUQ_156

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

43._LCT_EEN_37_/I GC-08-217-6-13

74.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

44._LCT_EEN_37_/I

74.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8613 5
 Dapeng Zhang, 2016

45._LCT_EEN_37_/I RUQ_156

45.6 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25