SNP Profiles of LP1/41 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	CT	CT	CC	CC	TT	CT	CC	AT	AG	CC	AA
1._RUQ_353	CT	AG	CG	CT	CT	CC	CC	TT	CT	CC	AT	AG	CC	AA
2._RUQ_353	__	AG	CG	CT	__	__	__	TT	__	__	__	__	CC	AA
3._RUQ_353	__	__	CG	__	__	__	__	TT	__	CC	__	AG	__	AA
4._LP_1_/41_[POU]	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
5._GC-05-148-4-01	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
6._GC-05-148-4-01	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
7._GC-05-148-4-01	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
8._GC-05-148-4-01	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
9._GC-05-055-2-06	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
10._GC-05-055-2-06	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
11._GC-05-055-2-06	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
12._GC-05-055-2-06	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
13._GC-05-055-2-06	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
14._GC-05-148-4-01	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
15._LP_1_/41_[POU]	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
16._LP_1_/41_[POU]	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
17._LP_1_/41_[POU]	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
18._LP_1_/41_[POU]	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
19._LP_1_/41_[POU]	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
20._LP_1_/41_[POU]	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
21._LP_1_/41_[POU]	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
22._LP_1_/41_[POU]	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
23._LP_1_/41_[POU]	CC	AA	CG	CC	CT	__	TT	GT	CC	TT	AA	AG	CT	AA
24._RUQ_353	AG	AG	CG	AG	AG	CC	GG	AA	__	__	AT	AG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	GG	TT	TT	GG	GG	AG	CT	CC	GG	GG	TT	CC
1._RUQ_353	TT	AT	GG	TT	TT	GG	GG	AG	CT	CC	GG	GG	TT	CC
2._RUQ_353	__	__	__	__	TT	GG	GG	__	CT	CC	GG	GG	__	CC
3._RUQ_353	__	__	__	__	__	GG	GG	AG	__	CC	GG	__	__	CC
4._LP_1_/41_[POU]	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
5._GC-05-148-4-01	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
6._GC-05-148-4-01	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
7._GC-05-148-4-01	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
8._GC-05-148-4-01	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
9._GC-05-055-2-06	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
10._GC-05-055-2-06	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
11._GC-05-055-2-06	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
12._GC-05-055-2-06	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
13._GC-05-055-2-06	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
14._GC-05-148-4-01	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
15._LP_1_/41_[POU]	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
16._LP_1_/41_[POU]	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
17._LP_1_/41_[POU]	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
18._LP_1_/41_[POU]	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
19._LP_1_/41_[POU]	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
20._LP_1_/41_[POU]	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
21._LP_1_/41_[POU]	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
22._LP_1_/41_[POU]	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
23._LP_1_/41_[POU]	CT	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC
24._RUQ_353	AA	AT	GG	AA	AA	CC	CC	__	AG	CC	GG	CC	__	CC

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	GG	TT	CC	AA	CC	CT	GG	CC	AA	CG	X_X	X_X	X_X
1._RUQ_353	GG	GG	TT	CC	AA	CC	CT	GG	CC	AA	CG	X_X	X_X	X_X
2._RUQ_353	GG	__	TT	CC	AA	CC	CT	GG	CC	__	__	X_X	X_X	X_X
3._RUQ_353	__	__	__	__	AA	__	__	__	CC	__	__	X_X	X_X	X_X
4._LP_1_/41_[POU]	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
5._GC-05-148-4-01	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
6._GC-05-148-4-01	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
7._GC-05-148-4-01	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
8._GC-05-148-4-01	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
9._GC-05-055-2-06	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
10._GC-05-055-2-06	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
11._GC-05-055-2-06	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
12._GC-05-055-2-06	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
13._GC-05-055-2-06	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
14._GC-05-148-4-01	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
15._LP_1_/41_[POU]	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
16._LP_1_/41_[POU]	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
17._LP_1_/41_[POU]	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
18._LP_1_/41_[POU]	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
19._LP_1_/41_[POU]	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
20._LP_1_/41_[POU]	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
21._LP_1_/41_[POU]	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
22._LP_1_/41_[POU]	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
23._LP_1_/41_[POU]	AG	GG	AA	TT	AG	AA	CT	GT	CC	AT	GG	X_X	X_X	X_X
24._RUQ_353	__	GG	TT	GG	AA	CC	AG	CC	CC	AA	CG	X_X	X_X	X_X

Input profile: LP_1_/41_[POU]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C796

Dapeng Zhang, 2016

1._LP_1_/41_[POU] RUQ_353

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._LP_1_/41_[POU] RUQ_353

identical
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._LP_1_/41_[POU] RUQ_353

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.170 Cri
0.126 Nac
0.655

4._LP_1_/41_[POU]

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 2 > FP

Dapeng Zhang, 2016

5._LP_1_/41_[POU] GC-05-148-4-01

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._LP_1_/41_[POU] GC-05-148-4-01

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._LP_1_/41_[POU] GC-05-148-4-01

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

8._LP_1_/41_[POU] GC-05-148-4-01

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP3

9._LP_1_/41_[POU] GC-05-055-2-06

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._LP_1_/41_[POU] GC-05-055-2-06

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

11._LP_1_/41_[POU] GC-05-055-2-06

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

12._LP_1_/41_[POU] GC-05-055-2-06

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._LP_1_/41_[POU] GC-05-055-2-06

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

14._LP_1_/41_[POU] GC-05-148-4-01

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

15._LP_1_/41_[POU]

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 2

Dapeng Zhang, 2016

16._LP_1_/41_[POU]

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 4

Dapeng Zhang, 2016

17._LP_1_/41_[POU]

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 5

Dapeng Zhang, 2016

18._LP_1_/41_[POU]

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 1 > FP

Dapeng Zhang, 2016

19._LP_1_/41_[POU]

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5206 3 > FP

Dapeng Zhang, 2016

20._LP_1_/41_[POU]

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 3

Dapeng Zhang, 2016

21._LP_1_/41_[POU]

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 4

Dapeng Zhang, 2016

22._LP_1_/41_[POU]

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 5

Dapeng Zhang, 2016

23._LP_1_/41_[POU]

56.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5401 1 > FP

Dapeng Zhang, 2016

24._LP_1_/41_[POU] RUQ_353

52.9 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25