SNP Profiles of MA-12   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAGGCCTTCCTTTTCCAAAACTAACTAA
1._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
2._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
3._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
4._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
5._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
6._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
7._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
8._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
9._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
10._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
11._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
12._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
13._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
14._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
15._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
16._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
17._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
18._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
19._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
20._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
21._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
22._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
23._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
24._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
25._MA_12_[BRA]___
AAGGCCTTCCTTTTCCAAAACTAACTAA
26._MA_12_[BRA]___
AAGGCC______TT______CTAA____
27._MA_12_[BRA]___
AGGGCCTTCCTTTTCCAAAACTAACTAA
28._MA_12_[BRA]___
__GG________TT____AA__AA____
29._MA_12_[BRA]___
__CC________________CT__CT__
30._MA_12_[BRA]___
AACCGGAACCAAAA__AAAAAGAAAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCCCCGGTAACCAACCTTCCCCAAGG
1._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
2._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
3._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
4._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
5._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
6._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
7._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
8._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
9._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
10._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
11._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
12._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
13._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
14._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
15._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
16._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
17._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
18._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
19._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
20._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
21._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
22._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
23._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
24._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
25._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
26._MA_12_[BRA]___
____CCCGGT__CCAACCTTCCCCAA__
27._MA_12_[BRA]___
GGCCCCCGGTAACCAACCTTCCCCAAGG
28._MA_12_[BRA]___
______CGGTAA__AACC____AC____
29._MA_12_[BRA]___
____CCCG______AACC__________
30._MA_12_[BRA]___
GGGGGGCGAC__GGAACCAA__CC__GG
 29 30 31 32 33 34 35 36 37      
_Input profile
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
1._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
2._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
3._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
4._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
5._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
6._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
7._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
8._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
9._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
10._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
11._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
12._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
13._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
14._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
15._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
16._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
17._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
18._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
19._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
20._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
21._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
22._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
23._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
24._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
25._MA_12_[BRA]___
AACTAGAACCTTCCTTGGX_XX_XX_XX_XX_X
26._MA_12_[BRA]___
AACTAGAACCTTCC____X_XX_XX_XX_XX_X
27._MA_12_[BRA]___
AACTAGAACCGTCCTTGGX_XX_XX_XX_XX_X
28._MA_12_[BRA]___
____AG______CC____X_XX_XX_XX_XX_X
29._MA_12_[BRA]___
AA__AGAACC__CC____X_XX_XX_XX_XX_X
30._MA_12_[BRA]___
AAAGAGAAGGAACCTTGGX_XX_XX_XX_XX_X

Input profile: MA_12_[BRA]

 
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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7302 1 > FP
 Dapeng Zhang, 2016

2._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

5._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._MA_12_[BRA] GC-07-067-4-03

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._MA_12_[BRA] GC-07-067-4-03

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._MA_12_[BRA] GC-07-047-3-02

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

11._MA_12_[BRA] GC-07-047-3-02

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

12._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._MA_12_[BRA] GC-08-045-1-56

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7302 2 > FP
 Dapeng Zhang, 2016

15._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7403 3
 Dapeng Zhang, 2016

16._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7403 1 > FP
 Dapeng Zhang, 2016

17._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 2
 Dapeng Zhang, 2016

18._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 3
 Dapeng Zhang, 2016

19._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 5
 Dapeng Zhang, 2016

20._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 6
 Dapeng Zhang, 2016

21._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 7
 Dapeng Zhang, 2016

22._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 10
 Dapeng Zhang, 2016

23._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 1 > FP
 Dapeng Zhang, 2016

24._MA_12_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 4 > FP
 Dapeng Zhang, 2016

25._MA_12_[BRA]

identical
37 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: V3 20
 Dapeng Zhang, 2016

26._MA_12_[BRA] RUQ_124

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._MA_12_[BRA] RUQ_124

97.3 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._MA_12_[BRA] RUQ_124

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.557 GU
0.051 IMC
0.323

29._MA_12_[BRA] MA12[BRA]

91.7 %
12 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

30._MA_12_[BRA] RUQ_124

54.5 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1414 5TcSNP1350
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP193 33TcSNP151 34TcSNP150 35TcSNP144
36TcSNP32 37TcSNP25