SNP Profiles of MO 20   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAACCTTCTACCTGTCTCTAAAGCTAA
1._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
2._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
3._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
4._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
5._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
6._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
7._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
8._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
9._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
10._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
11._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
12._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
13._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
14._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
15._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
16._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
17._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
18._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
19._MO_20___
CTAACCTTCTACCTGTCTCTAAAGCTAA
20._MO_20___
____CC________GT__CT__AG__AA
21._MO_20___
CTAACCTTCTACCTGTCTTTAAAGCTAA
22._MO_20___
______TT____________________
23._MO_20___
____GG__________________CT__
24._MO_20___
CCGGCCTTCCCCTTTTCTCCTTGGCCAA
25._MO_20___
CCGGCGCCTT__TTTTCCCCAAGGCCGG
26._MO_20___
CCGGCGCCTT__TTTTCCCCAAGGCCGG
27._MO_20___
AGAAGGAAAGACAGAC____AAAGAGAA
28._MO_20___
AGAAGGAAAGACAGAC____AAAGAGAA
29._MO_20___
AGAAGGAAAGACAGAC____AAAGAGAA
30._MO_20___
AGAACCAGAAAAGGAA____AAAAAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTATCGCTCTCGGGAATTCCCGGTCTAC
1._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
2._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
3._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
4._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
5._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
6._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
7._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
8._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
9._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
10._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
11._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
12._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
13._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
14._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
15._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
16._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
17._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
18._MO_20___
CTATCGCTCTCGGG__TTCCCGGTCTAC
19._MO_20___
CTATCGCTCTCGGG__TTCCCGGTCTAC
20._MO_20___
__________CGGGAA__CCCG____AC
21._MO_20___
CTATCGCTCTCGGGAATTCCCGGTCTAC
22._MO_20___
__________________CC__GG__AC
23._MO_20___
CT______CTCG______CCCG______
24._MO_20___
TTTTGGTTTTCCGTAACCCCGGGGCCAA
25._MO_20___
CTAAGGCCCCGGGGGGCCACCCGGCCAA
26._MO_20___
CTAAGGCCCCGGGGGGCCACCCGGCCAA
27._MO_20___
AGATCGAGAGCGCC__AACCCGAC__AC
28._MO_20___
AGATCGAGAGCGCC__AACCCGAC__AC
29._MO_20___
AGATCGAGAGCGCC__AACCCGAC__AC
30._MO_20___
AAAAGGAAGGCCCC__AACCCCAA__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAACTAGCCACCTGTACATCGX_XX_X
1._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
2._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
3._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
4._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
5._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
6._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
7._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
8._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
9._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
10._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
11._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
12._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
13._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
14._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
15._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
16._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
17._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
18._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
19._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
20._MO_20___
________AG________AC____X_XX_X
21._MO_20___
AGGGAACTAGCCACCTGTACATCGX_XX_X
22._MO_20___
GG________CC____________X_XX_X
23._MO_20___
____AA__AGGGACCT__CC____X_XX_X
24._MO_20___
GGAGTTCCAACCCCTTGGCCAACCX_XX_X
25._MO_20___
AGGGAACCGGCCAATTTTAATTGGX_XX_X
26._MO_20___
AGGGAACCGGCCAATTTTAATTGGX_XX_X
27._MO_20___
__GGAAAGAGGGACAGACACATCGX_XX_X
28._MO_20___
__GGAAAGAGGGACAGAC__ATCGX_XX_X
29._MO_20___
__GGAAAGAGGGACAGAC__ATCGX_XX_X
30._MO_20___
__GGATAGAAGGAAAGACCCATGGX_XX_X

Input profile: MO_20

 
Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

1._MO_20 GC-01-121-6-18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._MO_20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 

3._MO_20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

4._MO_20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

5._MO_20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

6._MO_20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

7._MO_20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

8._MO_20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

9._MO_20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

10._MO_20 GC-01-121-6-18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

11._MO_20 GC-01-121-6-18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

12._MO_20 GC-01-121-6-18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._MO_20 GC-01-121-6-18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

14._MO_20 GC-08-167-4-10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._MO_20 GC-08-167-4-10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._MO_20 GC-08-167-4-10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._MO_20 GC-08-167-4-10

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._MO_20

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

19._MO_20 GC-01-121-6-18

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

20._MO_20 RUQ_1566

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

21._MO_20

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

22._MO_20 RUQ_1566

83.3 %
6 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._MO_20 RUQ_1566

80.8 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

24._MO_20

53.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 809
 Dapeng Zhang, 2016

25._MO_20

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1618 13
 Dapeng Zhang, 2016
Population Assignment: 

26._MO_20 GC-01-121-6-18

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

27._MO_20 MO_20_Fld#_171_Plt#_1

51.4 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 171, Tree: 1
 Mars, 2018

28._MO_20 RUQ_1566

50 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

29._MO_20 MITC-000675

50 %
34 shared markers

USDA-SHRS, United States of America
 Mars, 2018

30._MO_20 MO_20_Fld#_74_Plt#_1

35.7 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 74, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25