SNP Profiles of MXC 67 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
1._MXC_67	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
2._GC-03-014-2-02	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
3._GC-03-014-2-02	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
4._GC-03-014-2-02	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
5._GC-03-014-2-02	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
6._GC-03-014-2-02	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
7._GC-03-014-2-02	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
8._GC-03-014-2-02	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
9._GC-03-014-2-02	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
10._GC-05-131-3-33	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
11._MXC_67	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
12._MXC_67	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
13._MXC_67	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
14._MXC_67	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
15._MXC_67	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
16._MXC_67	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
17._MXC_67	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
18._GC-05-131-3-33	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
19._MXC_67	CC	AG	CG	CC	TT	AA	CC	GG	TT	CT	AA	AA	CT	AG
20._RUQ_104	__	__	CG	__	__	__	__	GG	__	CT	__	AA	__	AG
21._RUQ_104	CC	AG	CG	CC	TT	AA	CC	GG	CT	CT	AA	AA	CT	AG
22._MXC_67	CT	AA	CG	CT	CT	AC	CT	GT	TT	CT	AT	AG	CT	AA
23._RUQ_104	GG	AG	CC	GG	AA	AA	GG	__	__	__	AA	AA	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
1._MXC_67	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
2._GC-03-014-2-02	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
3._GC-03-014-2-02	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
4._GC-03-014-2-02	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
5._GC-03-014-2-02	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
6._GC-03-014-2-02	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
7._GC-03-014-2-02	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
8._GC-03-014-2-02	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
9._GC-03-014-2-02	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
10._GC-05-131-3-33	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
11._MXC_67	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
12._MXC_67	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
13._MXC_67	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
14._MXC_67	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
15._MXC_67	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
16._MXC_67	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
17._MXC_67	TT	AA	GG	TT	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
18._GC-05-131-3-33	TT	AA	GG	__	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
19._MXC_67	TT	AA	GG	__	CC	CG	TT	TT	AA	CC	GG	CT	CC	GG
20._RUQ_104	__	__	__	__	__	CG	TT	__	AA	CC	__	__	CC	__
21._RUQ_104	TT	AA	GG	TT	CC	CG	TT	CT	AA	CC	GG	CT	CC	GG
22._MXC_67	CT	AT	CG	CT	CT	CG	GG	TT	CC	CC	GT	CT	AC	GG
23._RUQ_104	AA	AA	GG	AA	GG	CG	AA	AA	AA	CC	CC	__	CC	__

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
1._MXC_67	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
2._GC-03-014-2-02	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
3._GC-03-014-2-02	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
4._GC-03-014-2-02	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
5._GC-03-014-2-02	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
6._GC-03-014-2-02	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
7._GC-03-014-2-02	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
8._GC-03-014-2-02	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
9._GC-03-014-2-02	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
10._GC-05-131-3-33	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
11._MXC_67	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
12._MXC_67	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
13._MXC_67	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
14._MXC_67	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
15._MXC_67	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
16._MXC_67	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
17._MXC_67	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
18._GC-05-131-3-33	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
19._MXC_67	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
20._RUQ_104	__	__	__	GG	__	__	__	__	AA	__	__	X_X	X_X	X_X
21._RUQ_104	GG	AT	CC	GG	GG	CC	CC	GT	AA	AT	GG	X_X	X_X	X_X
22._MXC_67	AG	AA	CT	AG	__	AC	CT	GT	AA	AT	CG	X_X	X_X	X_X
23._RUQ_104	GG	AT	GG	GG	CC	CC	GG	AC	AA	AT	GG	X_X	X_X	X_X

Input profile: MXC_67

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Mars Center for Cocoa Science, Brazil

Location: 3202 4 > FP

Dapeng Zhang, 2016

1._MXC_67

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5333 5 > FP

Dapeng Zhang, 2016

2._MXC_67 GC-03-014-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

3._MXC_67 GC-03-014-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP4

4._MXC_67 GC-03-014-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

5._MXC_67 GC-03-014-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2

6._MXC_67 GC-03-014-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._MXC_67 GC-03-014-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP1

8._MXC_67 GC-03-014-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._MXC_67 GC-03-014-2-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._MXC_67 GC-05-131-3-33

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

11._MXC_67

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3202 1

Dapeng Zhang, 2016

12._MXC_67

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3202 2

Dapeng Zhang, 2016

13._MXC_67

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3202 5

Dapeng Zhang, 2016

14._MXC_67

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3202 9

Dapeng Zhang, 2016

15._MXC_67

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3202 16

Dapeng Zhang, 2016

16._MXC_67

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3202 12 > F

Dapeng Zhang, 2016

17._MXC_67

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3202 6 > FP

Dapeng Zhang, 2016

18._MXC_67 GC-05-131-3-33

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

19._MXC_67

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5333 4

Dapeng Zhang, 2016

20._MXC_67 RUQ_104

identical
12 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.494 Cri
0.498

21._MXC_67 RUQ_104

97.4 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

22._MXC_67

63.2 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 12 X3 Y4

Dapeng Zhang, 2016

23._MXC_67 RUQ_104

54.4 %
34 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25