SNP Profiles of NA 95   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCCTTAACCTTTTTTAAAACTGG
1._NA_95
TTAAGGCCTTAACCTTTTTTAAAACTGG
2._GC-08-168-4-11
TTAAGGCCTTAACCTTTTTTAAAACTGG
3._GC-01-122-6-19
TTAAGGCCTTAACCTTTTTTAAAACTGG
4._GC-01-122-6-19
CCAACGCTTTAACTGTCTTTAAAACCAG
5._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
6._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
7._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
8._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
9._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
10._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
11._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
12._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
13._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
14._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
15._GC-01-122-6-19
CCAACGCTTTAACTGTCTTTAAAACCAG
16._GC-01-122-6-19
CCAACGCTTTAACTGTCTTTAAAACCAG
17._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
18._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
19._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
20._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
21._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
22._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
23._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
24._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
25._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
26._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
27._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
28._GC-08-168-4-11
CCAACGCTTT__CTGTCTTTAAAACCAG
29._NA_95
CCAACGCTTT__CTGTCTTTAAAACCAG
30._NA_95
CCAACCTTTTCCTTTTCCCCAAGGCCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
1._NA_95
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
2._GC-08-168-4-11
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
3._GC-01-122-6-19
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
4._GC-01-122-6-19
CTAAGGTTCCGGGTGGTTACCCTTTTCC
5._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
6._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
7._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
8._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
9._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
10._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
11._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
12._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
13._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
14._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
15._GC-01-122-6-19
CTAAGGTTCCGGGTGGTTACCCTTTTCC
16._GC-01-122-6-19
CTAAGGTTCCGGGTGGTTACCCTTTTCC
17._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
18._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
19._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
20._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
21._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
22._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
23._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
24._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
25._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
26._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
27._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
28._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTT__CC
29._NA_95
CTAAGGTTCCGGGTGGTTACCCTT__CC
30._NA_95
TTATGGCCCTCGGGAACCAAGGGGTTCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAGCCACCTGTACTTGGX_XX_X
1._NA_95
AAGGAACCAGCCACCTGTACTTGGX_XX_X
2._GC-08-168-4-11
AAGGAACCAGCCACCTGTACTTGGX_XX_X
3._GC-01-122-6-19
AAGGAACCAGCCACCTGTACTTGGX_XX_X
4._GC-01-122-6-19
AGGGATCTAACGACCCTT__ATGGX_XX_X
5._NA_95
AGGGATCTAACGACCCTT__ATGGX_XX_X
6._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
7._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
8._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
9._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
10._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
11._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
12._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
13._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
14._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
15._GC-01-122-6-19
AGGGATCTAACGACCCTTCCATGGX_XX_X
16._GC-01-122-6-19
AGGGATCTAACGACCCTTCCATGGX_XX_X
17._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
18._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
19._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
20._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
21._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
22._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
23._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
24._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
25._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
26._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
27._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
28._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
29._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
30._NA_95
AAGGAACCAACCAACCGTACTTGGX_XX_X

Input profile: NA_95

 
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Mars Center for Cocoa Science, Brazil
Location: 1619 9 > FP
 Dapeng Zhang, 2016

1._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 3
 Dapeng Zhang, 2016

2._NA_95 GC-08-168-4-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._NA_95 GC-01-122-6-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

4._NA_95 GC-01-122-6-19

75.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

5._NA_95

75.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 3 > FP
 Dapeng Zhang, 2016

6._NA_95 GC-08-168-4-11

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._NA_95 GC-08-168-4-11

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._NA_95 GC-08-168-4-11

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._NA_95 GC-08-168-4-11

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._NA_95 GC-08-168-4-11

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

11._NA_95 GC-08-168-4-11

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._NA_95 GC-08-168-4-11

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._NA_95 GC-08-168-4-11

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._NA_95 GC-08-168-4-11

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._NA_95 GC-01-122-6-19

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._NA_95 GC-01-122-6-19

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 12
 Dapeng Zhang, 2016

18._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 1 > FP
 Dapeng Zhang, 2016

19._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 1
 Dapeng Zhang, 2016

20._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 2
 Dapeng Zhang, 2016

21._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 5
 Dapeng Zhang, 2016

22._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 6
 Dapeng Zhang, 2016

23._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 7
 Dapeng Zhang, 2016

24._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 9
 Dapeng Zhang, 2016

25._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 10
 Dapeng Zhang, 2016

26._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 11
 Dapeng Zhang, 2016

27._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 12
 Dapeng Zhang, 2016

28._NA_95 GC-08-168-4-11

73.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._NA_95

73.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 4
 Dapeng Zhang, 2016

30._NA_95

53.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 222
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25