SNP Profiles of NA 95   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACGCTTTCTGTCTTTAAAACCAGCT
1._GC-08-168-4-11
CCAACGCTTTCTGTCTTTAAAACCAGCT
2._GC-08-168-4-11
CCAACGCTTTCTGTCTTTAAAACCAGCT
3._GC-08-168-4-11
CCAACGCTTTCTGTCTTTAAAACCAGCT
4._GC-08-168-4-11
CCAACGCTTTCTGTCTTTAAAACCAGCT
5._GC-08-168-4-11
CCAACGCTTTCTGTCTTTAAAACCAGCT
6._GC-08-168-4-11
CCAACGCTTTCTGTCTTTAAAACCAGCT
7._GC-08-168-4-11
CCAACGCTTTCTGTCTTTAAAACCAGCT
8._GC-08-168-4-11
CCAACGCTTTCTGTCTTTAAAACCAGCT
9._GC-08-168-4-11
CCAACGCTTTCTGTCTTTAAAACCAGCT
10._GC-08-168-4-11
CCAACGCTTTCTGTCTTTAAAACCAGCT
11._GC-01-122-6-19
CCAACGCTTTCTGTCTTTAAAACCAGCT
12._GC-01-122-6-19
CCAACGCTTTCTGTCTTTAAAACCAGCT
13._NA_95
CCAACGCTTTCTGTCTTTAAAACCAGCT
14._NA_95
CCAACGCTTTCTGTCTTTAAAACCAGCT
15._NA_95
CCAACGCTTTCTGTCTTTAAAACCAGCT
16._NA_95
CCAACGCTTTCTGTCTTTAAAACCAGCT
17._NA_95
CCAACGCTTTCTGTCTTTAAAACCAGCT
18._NA_95
CCAACGCTTTCTGTCTTTAAAACCAGCT
19._NA_95
CCAACGCTTTCTGTCTTTAAAACCAGCT
20._NA_95
CCAACGCTTTCTGTCTTTAAAACCAGCT
21._NA_95
CCAACGCTTTCTGTCTTTAAAACCAGCT
22._NA_95
CCAACGCTTTCTGTCTTTAAAACCAGCT
23._NA_95
CCAACGCTTTCTGTCTTTAAAACCAGCT
24._GC-01-122-6-19
CCAACGCTTTCTGTCTTTAAAACCAGCT
25._NA_95
CCAACGCTTTCTGTCTTTAAAACCAGCT
26._NA_95
TTAAGGCCTTCCTTTTTTAAAACTGGCT
27._GC-08-168-4-11
TTAAGGCCTTCCTTTTTTAAAACTGGCT
28._GC-01-122-6-19
TTAAGGCCTTCCTTTTTTAAAACTGGCT
29._NA_95
TTAAGGCCTTCCTTTTTTAAAACTGGCT
30._NA_95
CCAACCTTTTTTTTCCCCAAGGCCAGTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGTTCCGGGTGGTTACCCTTCCAGGG
1._GC-08-168-4-11
AAGGTTCCGGGTGGTTACCCTTCCAGGG
2._GC-08-168-4-11
AAGGTTCCGGGTGGTTACCCTTCCAGGG
3._GC-08-168-4-11
AAGGTTCCGGGTGGTTACCCTTCCAGGG
4._GC-08-168-4-11
AAGGTTCCGGGTGGTTACCCTTCCAGGG
5._GC-08-168-4-11
AAGGTTCCGGGTGGTTACCCTTCCAGGG
6._GC-08-168-4-11
AAGGTTCCGGGTGGTTACCCTTCCAGGG
7._GC-08-168-4-11
AAGGTTCCGGGTGGTTACCCTTCCAGGG
8._GC-08-168-4-11
AAGGTTCCGGGTGGTTACCCTTCCAGGG
9._GC-08-168-4-11
AAGGTTCCGGGTGGTTACCCTTCCAGGG
10._GC-08-168-4-11
AAGGTTCCGGGTGGTTACCCTTCCAGGG
11._GC-01-122-6-19
AAGGTTCCGGGTGGTTACCCTTCCAGGG
12._GC-01-122-6-19
AAGGTTCCGGGTGGTTACCCTTCCAGGG
13._NA_95
AAGGTTCCGGGTGGTTACCCTTCCAGGG
14._NA_95
AAGGTTCCGGGTGGTTACCCTTCCAGGG
15._NA_95
AAGGTTCCGGGTGGTTACCCTTCCAGGG
16._NA_95
AAGGTTCCGGGTGGTTACCCTTCCAGGG
17._NA_95
AAGGTTCCGGGTGGTTACCCTTCCAGGG
18._NA_95
AAGGTTCCGGGTGGTTACCCTTCCAGGG
19._NA_95
AAGGTTCCGGGTGGTTACCCTTCCAGGG
20._NA_95
AAGGTTCCGGGTGGTTACCCTTCCAGGG
21._NA_95
AAGGTTCCGGGTGGTTACCCTTCCAGGG
22._NA_95
AAGGTTCCGGGTGGTTACCCTTCCAGGG
23._NA_95
AAGGTTCCGGGTGGTTACCCTTCCAGGG
24._GC-01-122-6-19
AAGGTTCCGGGTGGTTACCCTTCCAGGG
25._NA_95
AAGGTTCCGGGTGGTTACCCTTCCAGGG
26._NA_95
AAGGTTCCGGGGGGTTCCCCTTCCAAGG
27._GC-08-168-4-11
AAGGTTCCGGGGGGTTCCCCTTCCAAGG
28._GC-01-122-6-19
AAGGTTCCGGGGGGTTCCCCTTCCAAGG
29._NA_95
AAGGTTCCGGGGGGTTCCCCTTCCAAGG
30._NA_95
ATGGCCCTCGGGAACCAAGGGGCCAAGG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
1._GC-08-168-4-11
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
2._GC-08-168-4-11
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
3._GC-08-168-4-11
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
4._GC-08-168-4-11
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
5._GC-08-168-4-11
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
6._GC-08-168-4-11
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
7._GC-08-168-4-11
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
8._GC-08-168-4-11
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
9._GC-08-168-4-11
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
10._GC-08-168-4-11
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
11._GC-01-122-6-19
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
12._GC-01-122-6-19
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
13._NA_95
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
14._NA_95
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
15._NA_95
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
16._NA_95
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
17._NA_95
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
18._NA_95
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
19._NA_95
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
20._NA_95
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
21._NA_95
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
22._NA_95
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
23._NA_95
ATCTAACGACCCTTCCATGGX_XX_XX_XX_X
24._GC-01-122-6-19
ATCTAACGACCCTT__ATGGX_XX_XX_XX_X
25._NA_95
ATCTAACGACCCTT__ATGGX_XX_XX_XX_X
26._NA_95
AACCAGCCACCTGTACTTGGX_XX_XX_XX_X
27._GC-08-168-4-11
AACCAGCCACCTGTACTTGGX_XX_XX_XX_X
28._GC-01-122-6-19
AACCAGCCACCTGTACTTGGX_XX_XX_XX_X
29._NA_95
AACCAGCCACCTGTACTTGGX_XX_XX_XX_X
30._NA_95
AACCAACCAACCGTACTTGGX_XX_XX_XX_X

Input profile: NA_95

 
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Mars Center for Cocoa Science, Brazil
Location: 8411 4
 Dapeng Zhang, 2016

1._NA_95 GC-08-168-4-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._NA_95 GC-08-168-4-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

3._NA_95 GC-08-168-4-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._NA_95 GC-08-168-4-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._NA_95 GC-08-168-4-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._NA_95 GC-08-168-4-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._NA_95 GC-08-168-4-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._NA_95 GC-08-168-4-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._NA_95 GC-08-168-4-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._NA_95 GC-08-168-4-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._NA_95 GC-01-122-6-19

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

12._NA_95 GC-01-122-6-19

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 12
 Dapeng Zhang, 2016

14._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 1 > FP
 Dapeng Zhang, 2016

15._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 1
 Dapeng Zhang, 2016

16._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 2
 Dapeng Zhang, 2016

17._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 5
 Dapeng Zhang, 2016

18._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 6
 Dapeng Zhang, 2016

19._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 7
 Dapeng Zhang, 2016

20._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 9
 Dapeng Zhang, 2016

21._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 10
 Dapeng Zhang, 2016

22._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 11
 Dapeng Zhang, 2016

23._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 12
 Dapeng Zhang, 2016

24._NA_95 GC-01-122-6-19

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

25._NA_95

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 3 > FP
 Dapeng Zhang, 2016

26._NA_95

73.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 9 > FP
 Dapeng Zhang, 2016

27._NA_95 GC-08-168-4-11

73.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._NA_95 GC-01-122-6-19

73.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

29._NA_95

73.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 3
 Dapeng Zhang, 2016

30._NA_95

56.6 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 222
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25