SNP Profiles of MO 9   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCCCTTTACCTTTCCCCAAGGCCAG
1._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
2._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
3._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
4._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
5._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
6._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
7._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
8._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
9._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
10._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
11._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
12._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
13._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
14._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
15._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
16._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
17._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
18._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
19._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
20._PA_137_[PER]___
__GGCCCT______TT________CCAG
21._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
22._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
23._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
24._PA_137_[PER]___
CCGGCCCTTTACCTTTCC__AAGGCCAG
25._PA_137_[PER]___
CCGGCCCTTTACCTTTCC__AAGGCCAG
26._PA_137_[PER]___
______CT__________________AG
27._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
28._PA_137_[PER]___
CCGGCCCTTTACCTTTCCCCAAGGCCAG
29._PA_137_[PER]___
____CC________TT__CC__GG__AG
30._PA_137_[PER]___
____CC________TT__CC__GG__AG
31._PA_137_[PER]___
CCAGCGCTTTACCTGTCC__AAGG__AG
32._PA_137_[PER]___
____GG__________________CC__
33._PA_137_[PER]___
GGGGGGAGAAACAGAA____AAGGGGAG
34._PA_137_[PER]___
GGGGGGAGAAACAGAA____AAGGGGAG
35._PA_137_[PER]___
GGGGGGAGAAACAGAA____AAGGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGCTCCGGGGAGTTCCCGGGCTAC
1._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
2._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
3._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
4._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
5._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
6._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
7._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
8._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
9._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
10._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
11._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
12._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
13._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
14._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
15._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
16._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
17._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
18._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
19._PA_137_[PER]___
CTAACGCTCCGGGGAGTTCCCGGGCTAC
20._PA_137_[PER]___
________CCGGGG__TTCCCGGGCTAC
21._PA_137_[PER]___
CTAACGCTCCGGGGAATTCCCGGGCTAC
22._PA_137_[PER]___
CTAACGCTCCGGGGAATTCCCGGGCTAC
23._PA_137_[PER]___
CTAACGCTCCGG__AATTCCCGGGCTAC
24._PA_137_[PER]___
CTAACGCTCCGGGGAATTCCCGGGCTAC
25._PA_137_[PER]___
CTAACGCTCCGGGGAATTCCCGGGCTAC
26._PA_137_[PER]___
________CC__GG______CGGGCTAC
27._PA_137_[PER]___
CTAACGCTCCGGGGAACTCCCGGGCTAC
28._PA_137_[PER]___
CTAACGCTCCGGGGAACTCCCGGGCTAC
29._PA_137_[PER]___
__________GGGGAA__CCCG____AC
30._PA_137_[PER]___
__________GGGGAA__CCCG____AA
31._PA_137_[PER]___
CTAACGCTCC__GTAATT__CGGGCTAC
32._PA_137_[PER]___
CT______CCCC______CCCG______
33._PA_137_[PER]___
AGAACGAGGGCCCC__AACCCGCC__AC
34._PA_137_[PER]___
AGAACGAGGGCCCC__AACCCGCC__AC
35._PA_137_[PER]___
AGAACGAGGGCCCC__AACCCGCC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAACCAGCCAACTGTACATGGX_XX_X
1._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
2._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
3._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
4._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
5._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
6._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
7._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
8._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
9._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
10._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
11._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
12._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
13._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
14._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
15._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
16._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
17._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
18._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
19._PA_137_[PER]___
AGGGAACCAGCCAACTGTACATGGX_XX_X
20._PA_137_[PER]___
AG__AACCAGCCACCTGTAC____X_XX_X
21._PA_137_[PER]___
AGGGAACCAGCCACCTGTACATGGX_XX_X
22._PA_137_[PER]___
AGGGAACCAGCCACCTGTACATGGX_XX_X
23._PA_137_[PER]___
AGGGAACCAG__ACCTGTACATGGX_XX_X
24._PA_137_[PER]___
AGGGAACCAG__ACCTGTACATGGX_XX_X
25._PA_137_[PER]___
AGGGAACCAG__ACCTGTACATGGX_XX_X
26._PA_137_[PER]___
AG__AA__AG__AC__GTAC____X_XX_X
27._PA_137_[PER]___
AGGGAACCAGCCACCTGTACATGGX_XX_X
28._PA_137_[PER]___
AGGGAACCAGCCACCTGTACATGGX_XX_X
29._PA_137_[PER]___
________AG________AC____X_XX_X
30._PA_137_[PER]___
________AG________AC____X_XX_X
31._PA_137_[PER]___
AGGGAA__AGCGACCTGTACATGGX_XX_X
32._PA_137_[PER]___
____AA__AGGGACCT__AC____X_XX_X
33._PA_137_[PER]___
__GGAAGGAGGGACAGACACATGGX_XX_X
34._PA_137_[PER]___
__GGAAGGAGGGACAGACACATGGX_XX_X
35._PA_137_[PER]___
__GGAAGGAGGGACAGACACATGGX_XX_X

Input profile: PA_137_[PER]

 
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Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

1._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

2._PA_137_[PER] GC-05-009-1-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._PA_137_[PER] GC-05-009-1-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._PA_137_[PER] GC-05-009-1-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._PA_137_[PER] GC-05-009-1-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._PA_137_[PER] GC-05-009-1-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016

8._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

9._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

10._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

11._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

12._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

13._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

14._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

15._PA_137_[PER] GC-05-117-3-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

16._PA_137_[PER] GC-05-117-3-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._PA_137_[PER] GC-05-117-3-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._PA_137_[PER] GC-05-117-3-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._PA_137_[PER] GC-05-117-3-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._PA_137_[PER] RUQ_1081

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._PA_137_[PER] RUQ_1081

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._PA_137_[PER]

97.5 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

23._PA_137_[PER]

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

24._PA_137_[PER]

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

25._PA_137_[PER]

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

26._PA_137_[PER] RUQ_36

96.4 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._PA_137_[PER] RUQ_36

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._PA_137_[PER] RUQ_1081

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._PA_137_[PER] RUQ_1081

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

30._PA_137_[PER] RUQ_36

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.995

31._PA_137_[PER] RUQ_36

90 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._PA_137_[PER] PA137[PER]

73.1 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

47.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

47.1 %
35 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

47.1 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25