SNP Profiles of PA 150 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AGCGTTCCTTGTCCGGCTAACTAACGCC
1._PA_150_[PER]___
AACCTTAATTTTCCGGCTAGCTAAGGCT
2._PA_150_[PER]___
AGCGCTACCCGTCTAGCTAGCTATCCCT
3._PA_150_[PER]___
AGCGCTACCCGTCTAGCTAGCTATCCCT
4._PA_150_[PER]___
AACGTTACCTTTCCGGTTGGCTAAGGTT
5._PA_150_[PER]___
GGGGCCACCTTTCCAGCCAGCTAACCCT
6._PA_150_[PER]___
GGGGCCACCTTTCCAGCCAGCTAACCCT
7._PA_150_[PER]___
AACGTTACCTTTCCGGTTGGCTAAGGTT
8._PA_150_[PER]___
GGGGCCACCTTTCCAGCCAGCTAACCCT
9._PA_150_[PER]___
GGGGCCACCTTTCCAGCCAGCTAACCCT
10._PA_150_[PER]___
GGGGCCACCTTTCCAGCCAGCTAACCCT
11._PA_150_[PER]___
GGGGCCACCTTTCCAGCCAGCTAACCCT
12._PA_150_[PER]___
AACGTTACCTTTCCGGTTGGCTAAGGTT
13._PA_150_[PER]___
AACGTTACCTTTCCGGTTGGCTAAGGTT
14._PA_150_[PER]___
AACGTTACCTTTCCGGTTGGCTAAGGTT
15._PA_150_[PER]___
AACGTTACCTTTCCGGTTGGCTAAGGTT
16._PA_150_[PER]___
AACGTTACCTTTCCGGTTGGCTAAGGTT
17._PA_150_[PER]___
AACGTTACCTTTCCGGTTGGCTAAGGTT
18._PA_150_[PER]___
GGGGCCACCTTTCCAGCCAGCTAACCCT
19._PA_150_[PER]___
AACGTTACCTTTCCGGTTGGCTAAGGTT
20._PA_150_[PER]___
GGGGCCACCTTTCCAGCCAGCTAACCCT
21._PA_150_[PER]___
AACGTTACCTTTCCGGTTGGCTAAGGTT
22._PA_150_[PER]___
AGGGCCACTTTTCCGGCCAGCCAACCCT
23._PA_150_[PER]___
AGGGCCACTTTTCCGGCCAGCCAACCCT
24._PA_150_[PER]___
AGGGCCACTTTTCCGGCCAGCCAACCCT
25._PA_150_[PER]___
AGGGCCACTTTTCCGGCCAGCCAACCCT
26._PA_150_[PER]___
__GG______TT__GG__AG________
27._PA_150_[PER]___
AACGAAACAGAA__GGAAGGAGAAGGAA
28._PA_150_[PER]___
AACGAAACAGAA__GGAAGGAGAAGGAA
29._PA_150_[PER]___
GGCCGGACAGAA__AGGGAGAGAACCAG
30._PA_150_[PER]___
AGCCGGACAAAA__GGGGAGGGAACCAG
31._PA_150_[PER]___
AGCCGGACAAAA__GGGGAGGGAACCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCCCGGGGCTACGGGGCCACAGGGAACC
1._PA_150_[PER]___
CTCCGGAACTAAGGGTCTCCAAGGAACT
2._PA_150_[PER]___
CTCGGGAGTTACCCGTCTACAGGGAACC
3._PA_150_[PER]___
CTCGGGAGTTACCCGTCTACAGGGAACC
4._PA_150_[PER]___
CTGGGTGGTTAAGGTTCTACAAGGAACC
5._PA_150_[PER]___
CCGGGGAGTTCCCGGTCCACAAGGAACC
6._PA_150_[PER]___
CCGGGGAGTTCCCGGTCCACAAGGAACC
7._PA_150_[PER]___
CTGGGTGGTTAAGGTTCTACAAGGAACC
8._PA_150_[PER]___
CCGGGGAGTTCCCGGTCCACAAGGAACC
9._PA_150_[PER]___
CCGGGGAGTTCCCGGTCCACAAGGAACC
10._PA_150_[PER]___
CCGGGGAGTTCCCGGTCCACAAGGAACC
11._PA_150_[PER]___
CCGGGGAGTTCCCGGTCCACAAGGAACC
12._PA_150_[PER]___
CTGGGTGGTTAAGGTTCTACAAGGAACC
13._PA_150_[PER]___
CTGGGTGGTTAAGGTTCTACAAGGAACC
14._PA_150_[PER]___
CTGGGTGGTTAAGGTTCTACAAGGAACC
15._PA_150_[PER]___
CTGGGTGGTTAAGGTTCTACAAGGAACC
16._PA_150_[PER]___
CTGGGTGGTTAAGGTTCTACAAGGAACC
17._PA_150_[PER]___
CTGGGTGGTTAAGGTTCTACAAGGAACC
18._PA_150_[PER]___
CCGGGGAGTTCCCGGTCCACAAGGAACC
19._PA_150_[PER]___
CTGGGTGGTTAAGGTTCTACAAGGAACC
20._PA_150_[PER]___
CCGGGGAGTTCCCGGTCCACAAGGAACC
21._PA_150_[PER]___
CTGGGTGGTTAAGGTTCTACAAGGAACC
22._PA_150_[PER]___
CCGGGGAATTACCGTTCTACAGGGAACC
23._PA_150_[PER]___
CCGGGGAATTACCGTTCTACAGGGAACC
24._PA_150_[PER]___
CCGGGGAATTACCGTTCTACAGGGAACC
25._PA_150_[PER]___
CCGGGGAATTACCGTTCTACAGGGAACC
26._PA_150_[PER]___
__GGGGAA__ACCG____AA________
27._PA_150_[PER]___
AGCCAC__AAAAGGAA__AC__GGAAGG
28._PA_150_[PER]___
AGCCAC__AAAAGGAA__AC__GGAAGG
29._PA_150_[PER]___
GGCCCC__AACCCGAC__AC__GGAAGG
30._PA_150_[PER]___
GGCCCC__AAACCGAA__AC__GGAAGG
31._PA_150_[PER]___
GGCCCC__AAACCGAA__AC__GGAAGG
 29 30 31 32 33 34 35        
_Input profile
AAACTTGGCCTTCCX_XX_XX_XX_XX_XX_XX_X
1._PA_150_[PER]___
AAAACTGGACTTGGX_XX_XX_XX_XX_XX_XX_X
2._PA_150_[PER]___
AAACCTGTAAATCGX_XX_XX_XX_XX_XX_XX_X
3._PA_150_[PER]___
AAACCTGTAAATCGX_XX_XX_XX_XX_XX_XX_X
4._PA_150_[PER]___
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
5._PA_150_[PER]___
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
6._PA_150_[PER]___
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
7._PA_150_[PER]___
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
8._PA_150_[PER]___
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
9._PA_150_[PER]___
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
10._PA_150_[PER]___
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
11._PA_150_[PER]___
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
12._PA_150_[PER]___
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
13._PA_150_[PER]___
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
14._PA_150_[PER]___
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
15._PA_150_[PER]___
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
16._PA_150_[PER]___
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
17._PA_150_[PER]___
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
18._PA_150_[PER]___
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
19._PA_150_[PER]___
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
20._PA_150_[PER]___
AGAACCGGCCATGGX_XX_XX_XX_XX_XX_XX_X
21._PA_150_[PER]___
AGAATTGTACATGGX_XX_XX_XX_XX_XX_XX_X
22._PA_150_[PER]___
GGAACCGGACAAGGX_XX_XX_XX_XX_XX_XX_X
23._PA_150_[PER]___
GGAACCGGACAAGGX_XX_XX_XX_XX_XX_XX_X
24._PA_150_[PER]___
GGAACCGGACAAGGX_XX_XX_XX_XX_XX_XX_X
25._PA_150_[PER]___
GGAACCGGACAAGGX_XX_XX_XX_XX_XX_XX_X
26._PA_150_[PER]___
GG______AC____X_XX_XX_XX_XX_XX_XX_X
27._PA_150_[PER]___
AGACAAACACATGGX_XX_XX_XX_XX_XX_XX_X
28._PA_150_[PER]___
AGACAAACACATGGX_XX_XX_XX_XX_XX_XX_X
29._PA_150_[PER]___
AGACGGCCCCATGGX_XX_XX_XX_XX_XX_XX_X
30._PA_150_[PER]___
GGAA__CCACAAGGX_XX_XX_XX_XX_XX_XX_X
31._PA_150_[PER]___
GGAAGGCCACAAGGX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_150_[PER]

 
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

1._PA_150_[PER]

68.6 %
35 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

2._PA_150_[PER]

65.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016

3._PA_150_[PER] GC-01-034-2-11

65.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

4._PA_150_[PER]

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016

5._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._PA_150_[PER]

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

9._PA_150_[PER]

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

10._PA_150_[PER]

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

11._PA_150_[PER]

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

12._PA_150_[PER]

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

13._PA_150_[PER]

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

14._PA_150_[PER]

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

15._PA_150_[PER]

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

16._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

20._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

21._PA_150_[PER] GC-01-034-2-11

61.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

22._PA_150_[PER]

58.6 %
35 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

23._PA_150_[PER]

58.6 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

24._PA_150_[PER]

58.6 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

25._PA_150_[PER]

58.6 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

26._PA_150_[PER] RUQ_1731

50 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

27._PA_150_[PER] GC-01-34-2-11

40.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

28._PA_150_[PER] GC-01-34-2-11

40.3 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

29._PA_150_[PER] GC-01-34-2-11

38.7 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

30._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

38.3 %
30 shared markers

USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

31._PA_150_[PER] RUQ_1731

37.1 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1350 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1062 9TcSNP1060 10TcSNP998
11TcSNP994 12TcSNP953 13TcSNP929 14TcSNP917 15TcSNP891
16TcSNP872 17TcSNP723 18TcSNP645 19TcSNP619 20TcSNP591
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP230 30TcSNP193
31TcSNP151 32TcSNP150 33TcSNP144 34TcSNP32 35TcSNP25