SNP Profiles of PA 175 [PER] View Data

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_Input profile	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AA
1._PA_175_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AA
2._PA_175_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AA
3._PA_175_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AA
4._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AA
5._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AA
6._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AA
7._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AA
8._RUQ_37	__	GG	CG	CT	__	__	__	TT	__	__	__	__	CC	AA
9._RUQ_37	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AA
10._PA_175_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AA
11._PA_175_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AA
12._RUQ_37	__	__	CG	__	__	__	__	TT	__	CC	__	AG	__	AA
13._-	GG	GG	CG	AG	AA	AC	GG	AA	__	__	AA	AG	GG	AA
14._RUQ_37	GG	GG	CG	AG	AA	AC	GG	AA	__	__	AA	AG	GG	AA
15._MITC-000016	GG	GG	CG	AG	AA	AC	GG	AA	__	__	AA	AG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	CG	CT	CC	GG	GG	GG	TT	AC	CG	GT	CT	AC
1._PA_175_[PER]	TT	AA	CG	CT	CC	GG	GG	GG	TT	AC	CG	GT	CT	AC
2._PA_175_[PER]	TT	AA	CG	CT	CC	GG	GG	GG	TT	AC	CG	GT	CT	AC
3._PA_175_[PER]	TT	AA	CG	CT	CC	GG	GG	GG	TT	AC	CG	GT	CT	AC
4._NA	TT	AA	CG	CT	CC	GG	GG	GG	TT	AC	CG	GT	CT	AC
5._NA	TT	AA	CG	CT	CC	GG	GG	GG	TT	AC	CG	GT	CT	AC
6._NA	TT	AA	CG	CT	CC	GG	GG	GG	TT	AC	CG	GT	CT	AC
7._NA	TT	AA	CG	CT	CC	GG	GG	GG	TT	AC	CG	GT	CT	AC
8._RUQ_37	__	__	__	__	CC	GG	GG	__	TT	AC	CG	GT	CT	AC
9._RUQ_37	TT	AA	CG	CT	CC	GG	GG	AA	TT	AC	CG	GT	CT	AC
10._PA_175_[PER]	TT	AA	CG	CT	CC	GG	GG	AA	TT	AC	CG	GT	CT	AC
11._PA_175_[PER]	TT	AA	CG	CT	CC	GG	__	AA	TT	AC	CG	GT	CT	AC
12._RUQ_37	__	__	__	__	__	GG	GG	AA	__	AC	CG	__	__	AA
13._-	AA	AA	CG	AG	GG	CC	CC	__	AA	AC	CG	AC	__	AC
14._RUQ_37	AA	AA	CG	AG	GG	CC	CC	__	AA	AC	CG	AC	__	AC
15._MITC-000016	AA	AA	CG	AG	GG	CC	CC	__	AA	AC	CG	AC	__	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	GG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
1._PA_175_[PER]	AA	GG	AA	CC	GG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
2._PA_175_[PER]	AA	GG	AA	CC	GG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
3._PA_175_[PER]	AA	GG	AA	CC	GG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
4._NA	AA	GG	AA	CC	GG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
5._NA	AA	GG	AA	CC	GG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
6._NA	AA	GG	AA	CC	GG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
7._NA	AA	GG	AA	CC	GG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
8._RUQ_37	AA	__	AA	CC	GG	CC	AA	CC	GG	CC	__	__	X_X	X_X
9._RUQ_37	AA	GG	AA	CC	GG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
10._PA_175_[PER]	AA	GG	AA	CC	GG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
11._PA_175_[PER]	AA	GG	AA	CC	GG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
12._RUQ_37	__	__	__	__	GG	__	__	__	__	CC	__	__	X_X	X_X
13._-	__	GG	AA	GG	GG	GG	AA	GG	CC	CC	AT	GG	X_X	X_X
14._RUQ_37	__	GG	AA	GG	GG	GG	AA	GG	CC	CC	AT	GG	X_X	X_X
15._MITC-000016	__	GG	AA	GG	GG	GG	AA	GG	CC	CC	AT	GG	X_X	X_X

Input profile: PA_175_[PER]

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Mars Center for Cocoa Science, Brazil

Location: 8127 9

Dapeng Zhang, 2016

1._PA_175_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8127 5

Dapeng Zhang, 2016

2._PA_175_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8127 8

Dapeng Zhang, 2016

3._PA_175_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8127 12

Dapeng Zhang, 2016

4._PA_175_[PER] NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

5._PA_175_[PER] NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

6._PA_175_[PER] NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

7._PA_175_[PER] NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

8._PA_175_[PER] RUQ_37

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._PA_175_[PER] RUQ_37

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._PA_175_[PER]

97.5 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 738

Dapeng Zhang, 2016

11._PA_175_[PER]

97.4 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B F473 T6

Dapeng Zhang, 2014

12._PA_175_[PER] RUQ_37

88.5 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

13._PA_175_[PER] -

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 27, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership

14._PA_175_[PER] RUQ_37

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

15._PA_175_[PER] MITC-000016

51.4 %
35 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25