SNP Profiles of IMC 47 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
1._PA_56_[PER]___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
2._PA_56_[PER]___	__	GG	CG	CT	__	__	__	TT	__	__	__	__	CC	AG
3._PA_56_[PER]___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
4._PA_56_[PER]___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
5._PA_56_[PER]___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
6._PA_56_[PER]___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
7._PA_56_[PER]___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
8._PA_56_[PER]___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
9._PA_56_[PER]___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
10._PA_56_[PER]___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
11._PA_56_[PER]___	__	__	CG	__	__	__	__	TT	__	CC	__	GG	__	AG
12._PA_56_[PER]___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
13._PA_56_[PER]___	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
14._PA_56_[PER]___	GG	GG	CG	AG	AA	AC	GG	AA	__	__	AA	GG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
1._PA_56_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
2._PA_56_[PER]___	__	__	__	__	CC	GG	GG	__	TT	CC	CG	GT	CT	AC
3._PA_56_[PER]___	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
4._PA_56_[PER]___	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
5._PA_56_[PER]___	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
6._PA_56_[PER]___	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
7._PA_56_[PER]___	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
8._PA_56_[PER]___	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
9._PA_56_[PER]___	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
10._PA_56_[PER]___	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
11._PA_56_[PER]___	__	__	__	__	__	GG	GG	AA	__	CC	CG	__	__	AA
12._PA_56_[PER]___	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
13._PA_56_[PER]___	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
14._PA_56_[PER]___	AG	AA	GG	AG	GG	CC	CC	__	AA	CC	CG	AC	__	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AG	CC	AC	CC	GG	CC	AA	GG	X_X	X_X
1._PA_56_[PER]___	AA	GG	AA	CC	AG	CC	AC	CC	GG	CC	AA	GG	X_X	X_X
2._PA_56_[PER]___	AA	__	AA	CC	AG	CC	AC	CC	GG	CC	__	__	X_X	X_X
3._PA_56_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
4._PA_56_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
5._PA_56_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
6._PA_56_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
7._PA_56_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
8._PA_56_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
9._PA_56_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
10._PA_56_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
11._PA_56_[PER]___	__	__	__	__	AG	__	__	__	__	CC	__	__	X_X	X_X
12._PA_56_[PER]___	AA	GG	__	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
13._PA_56_[PER]___	AA	GG	__	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
14._PA_56_[PER]___	__	GG	AA	GG	AG	GG	AC	GG	CC	CC	AA	GG	X_X	X_X

Input profile: PA_56_[PER] RUQ_32

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._PA_56_[PER]

identical
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

2._PA_56_[PER] RUQ_32

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._PA_56_[PER] NA

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

4._PA_56_[PER] NA

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

5._PA_56_[PER] NA

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._PA_56_[PER] NA

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._PA_56_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 6

Dapeng Zhang, 2016

8._PA_56_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 4

Dapeng Zhang, 2016

9._PA_56_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 3

Dapeng Zhang, 2016

10._PA_56_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 2

Dapeng Zhang, 2016

11._PA_56_[PER] RUQ_32

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

12._PA_56_[PER] NA

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

13._PA_56_[PER]

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 1

Dapeng Zhang, 2016

14._PA_56_[PER] -

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 76, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25