SNP Profiles of PA 70 [PER] View Data

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_Input profile	CC	AG	GG	CT	TT	AC	CC	TT	CC	AA	AG	CC	AG	CC
1._RUQ_33	CC	AG	GG	CT	TT	AC	CC	TT	CC	AA	AG	CC	AG	CC
2._RUQ_33	__	AG	GG	CT	__	__	__	TT	__	__	__	CC	AG	__
3._RUQ_33	__	__	GG	__	__	__	__	TT	__	__	AG	__	AG	__
4._PA_70_[PER]	CC	AG	GG	CT	TT	AC	CC	TT	CC	AA	AG	CC	AG	CC
5._GC-04-053-3-17	CC	AG	GG	CT	TT	AC	CC	TT	CC	AA	AG	CC	AG	CC
6._PA70[PER]	__	__	CC	__	__	__	__	__	__	__	__	CC	__	CC
7._PA_70_[PER]	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
8._GC-04-053-3-17	TT	AA	GG	CT	TT	AA	CC	TT	CT	AA	AA	TT	AG	TT
9._GC-04-53-3-17	GG	AG	CC	AG	AA	AC	GG	AA	__	AA	AG	GG	AG	GG
10._RUQ_33	GG	AG	CC	AG	AA	AC	GG	AA	__	AA	AG	GG	AG	GG
11._MITC-000025	GG	AG	CC	AG	AA	AC	GG	AA	__	AA	AG	GG	AG	GG
12._MITC-000026	GG	AG	CC	AG	AA	AC	GG	AA	__	AA	AG	GG	AG	GG
13._PA_70_[PER]_Fld#_185_Plt#_1	AG	AG	CG	AG	AA	CC	AG	AA	__	AA	GG	GG	AG	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CG	CT	CC	GG	GG	AA	TT	AC	CG	GG	TT	AA	AA
1._RUQ_33	AA	CG	CT	CC	GG	GG	AA	TT	AC	CG	GG	TT	AA	AA
2._RUQ_33	__	__	__	CC	GG	GG	__	TT	AC	CG	GG	TT	AA	AA
3._RUQ_33	__	__	__	__	GG	GG	AA	__	AC	CG	__	__	AA	__
4._PA_70_[PER]	AA	CG	CT	CC	GG	GG	AG	TT	AC	CG	GG	TT	AA	AA
5._GC-04-053-3-17	AA	CG	CT	CC	GG	GG	AG	TT	AC	CG	GG	TT	AA	AA
6._PA70[PER]	__	__	__	CC	CC	__	__	__	AC	CG	__	__	__	__
7._PA_70_[PER]	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC	AG
8._GC-04-053-3-17	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC	AG
9._GC-04-53-3-17	AA	CG	AG	GG	CC	CC	__	AA	AC	CG	CC	__	AA	__
10._RUQ_33	AA	CG	AG	GG	CC	CC	__	AA	AC	CG	CC	__	AA	__
11._MITC-000025	AA	CG	AG	GG	CC	CC	__	AA	AC	CG	CC	__	AA	__
12._MITC-000026	AA	CG	AG	GG	CC	CC	__	AA	AC	CG	CC	__	AA	__
13._PA_70_[PER]_Fld#_185_Plt#_1	AA	CC	GG	GG	CC	CC	__	AA	CC	GG	__	__	AA	__

	29	30	31	32	33	34	35	36	37	38
_Input profile	GG	AA	CC	AG	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
1._RUQ_33	GG	AA	CC	AG	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
2._RUQ_33	__	AA	CC	AG	AA	CC	GG	AA	__	__	X_X	X_X	X_X	X_X
3._RUQ_33	__	__	__	AG	__	__	__	AA	__	__	X_X	X_X	X_X	X_X
4._PA_70_[PER]	GG	AA	CC	AG	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
5._GC-04-053-3-17	GG	AA	CC	AG	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X	X_X
6._PA70[PER]	__	AA	__	AG	AA	CC	__	AA	__	__	X_X	X_X	X_X	X_X
7._PA_70_[PER]	GG	AT	CT	AG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
8._GC-04-053-3-17	GG	AT	CT	AG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
9._GC-04-53-3-17	GG	AA	GG	AG	AA	GG	CC	AA	AT	GG	X_X	X_X	X_X	X_X
10._RUQ_33	GG	AA	GG	AG	AA	GG	CC	AA	AT	GG	X_X	X_X	X_X	X_X
11._MITC-000025	GG	AA	GG	AG	AA	GG	CC	AA	AT	GG	X_X	X_X	X_X	X_X
12._MITC-000026	GG	AA	GG	AG	AA	GG	CC	AA	AT	GG	X_X	X_X	X_X	X_X
13._PA_70_[PER]_Fld#_185_Plt#_1	GG	AA	GG	AG	AC	AG	CC	AA	AT	GG	X_X	X_X	X_X	X_X

Input profile: PA_70_[PER]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D634

Dapeng Zhang, 2016

1._PA_70_[PER] RUQ_33

identical
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._PA_70_[PER] RUQ_33

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._PA_70_[PER] RUQ_33

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

4._PA_70_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 6 > FP

Dapeng Zhang, 2016

5._PA_70_[PER] GC-04-053-3-17

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2 (verde)

6._PA_70_[PER] PA70[PER]

83.3 %
12 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

7._PA_70_[PER]

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

8._PA_70_[PER] GC-04-053-3-17

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

9._PA_70_[PER] GC-04-53-3-17

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)

Notes: MCCS_Structure_refs_above_0.9membership

10._PA_70_[PER] RUQ_33

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

11._PA_70_[PER] MITC-000025

50 %
34 shared markers

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USDA-SHRS, United States of America

12._PA_70_[PER] MITC-000026

50 %
34 shared markers

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USDA-SHRS, United States of America

13._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

43.9 %
33 shared markers

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USDA-TARS, United States of America

Location: Field: 185, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25