SNP Profiles of IMC 47 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
1._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
2._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
3._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
4._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
5._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
6._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
7._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
8._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
9._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
10._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
11._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
12._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
13._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
14._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
15._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
16._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
17._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
18._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
19._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
20._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
21._PA_72_[PER]___	CT	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
22._PA_72_[PER]___	AG	AG	CC	AG	AA	AC	GG	AA	__	__	AA	GG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
1._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
2._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
3._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
4._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
5._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
6._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
7._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
8._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
9._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
10._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
11._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
12._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
13._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
14._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
15._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
16._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
17._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
18._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
19._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
20._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
21._PA_72_[PER]___	CT	AA	GG	CT	CC	GG	__	AA	TT	CC	CG	GT	CT	AC
22._PA_72_[PER]___	AG	AA	GG	AG	GG	CC	CC	__	AA	CC	CG	AC	__	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
1._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
2._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
3._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
4._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
5._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
6._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
7._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
8._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
9._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
10._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
11._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
12._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
13._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
14._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
15._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
16._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
17._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
18._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
19._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
20._PA_72_[PER]___	AA	GG	AA	CC	AG	CC	AC	CC	GT	AC	AA	GG	X_X	X_X
21._PA_72_[PER]___	AA	GG	AA	CC	AG	__	AC	CC	GT	AC	AA	GG	X_X	X_X
22._PA_72_[PER]___	__	GG	AA	GG	AG	GG	AC	GG	AC	AC	AA	GG	X_X	X_X

Input profile: PA_72_[PER]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8162 4 > FP

Dapeng Zhang, 2016

1._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

2._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

3._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

4._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

5._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

8._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._PA_72_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8162 7 > FP

Dapeng Zhang, 2016

12._PA_72_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8162 1 > FP

Dapeng Zhang, 2016

13._PA_72_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8162 10

Dapeng Zhang, 2016

14._PA_72_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8162 9

Dapeng Zhang, 2016

15._PA_72_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8162 8

Dapeng Zhang, 2016

16._PA_72_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8162 6

Dapeng Zhang, 2016

17._PA_72_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8162 5

Dapeng Zhang, 2016

18._PA_72_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8162 3

Dapeng Zhang, 2016

19._PA_72_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8162 2

Dapeng Zhang, 2016

20._PA_72_[PER]

98.8 %
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 633

Dapeng Zhang, 2016

21._PA_72_[PER]

98.7 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 633

Dapeng Zhang, 2014

22._PA_72_[PER] GC-08-51-1-62

47.1 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 62, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25