SNP Profiles of POUND 4 /A   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGTTCTACTTGTCCCCAAAGCCAA
1._GC-08-158-4-01
CCAGCGTTCTACTTGTCCCCAAAGCCAA
2._GC-04-043-3-07
CCAGCGTTCTACTTGTCCCCAAAGCCAA
3._GC-04-043-3-07
CCAGCGTTCTACTTGTCCCCAAAGCCAA
4._GC-04-043-3-07
CCAGCGTTCTACTTGTCCCCAAAGCCAA
5._GC-04-043-3-07
CCAGCGTTCTACTTGTCCCCAAAGCCAA
6._GC-04-043-3-07
CCAGCGTTCTACTTGTCCCCAAAGCCAA
7._GC-08-158-4-01
CCAGCGTTCTACTTGTCCCCAAAGCCAA
8._GC-08-158-4-01
CCAGCGTTCTACTTGTCCCCAAAGCCAA
9._GC-08-158-4-01
CCAGCGTTCTACTTGTCCCCAAAGCCAA
10._GC-08-159-4-02
CCAGCGTTCTACTTGTCCCCAAAGCCAA
11._GC-08-159-4-02
CCAGCGTTCTACTTGTCCCCAAAGCCAA
12._GC-08-159-4-02
CCAGCGTTCTACTTGTCCCCAAAGCCAA
13._GC-08-159-4-02
CCAGCGTTCTACTTGTCCCCAAAGCCAA
14._GC-08-158-4-01
CCAGCGTTCTACTTGTCCCCAAAGCCAA
15._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
16._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
17._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
18._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
19._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
20._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
21._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
22._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
23._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
24._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
25._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
26._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
27._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
28._GC-04-043-3-07
CCAGCGTTCTACTTGTCCCCAAAGCCAA
29._GC-08-158-4-01
CCAGCGTTCTACTTGTCCCCAAAGCCAA
30._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
31._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
32._GC-04-043-3-07
CCAGCGTTCTACTTGTCCCCAAAGCCAA
33._POUND_4_/A
CCAGCGTTCTACTTGTCCCCAAAGCCAA
34._POUND_4_/A
CCAGGGTTCTCCTTGTCTCCATGGCCAA
35._GC-08-159-4-02
CCAGGGCTTTACCC__CCCCAAAGCCAG
36._POUND_4_/A
CCAGGGCTTTACCC__CCCCAAAGCCAG
37._GC-08-158-4-01
CCAGGGCTTTACCCTTCCCCAAAGCCAG
38._POUND_4_/A
CCAGGGCTTTACCCTTCCCCAAAGCCAG
39._POUND_4_/A
CCAGGGCTTTACCCTTCCCCAAAGCCAG
40._GC-08-159-4-02
CCAGGGCTTTACCCTTCCCCAAAGCCAG
41._GC-08-159-4-02
CCAGGGCTTTACCCTTCCCCAAAGCCAG
42._GC-08-159-4-02
CCAGGGCTTTACCCTTCCCCAAAGCCAG
43._POUND_4_/A
CCAGGGCTTTACCCTTCCCCAAAGCCAG
44._POUND_4_/A
CCAGGGCTTTACCCTTCCCCAAAGCCAG
45._GC-08-159-4-02
CCGGCGCTCT__TTGGTTCCATGGCCAA
46._POUND_4_/A
CCGGCGCTCT__TTGGTTCCATGGCCAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCATGGTTTTCGGGAACTAAGGGTCTCC
1._GC-08-158-4-01
CCATGGTTTTCGGGAACTAAGGGTCTCC
2._GC-04-043-3-07
CCATGGTTTTCGGGAACTAAGGGTCTCC
3._GC-04-043-3-07
CCATGGTTTTCGGGAACTAAGGGTCTCC
4._GC-04-043-3-07
CCATGGTTTTCGGGAACTAAGGGTCTCC
5._GC-04-043-3-07
CCATGGTTTTCGGGAACTAAGGGTCTCC
6._GC-04-043-3-07
CCATGGTTTTCGGGAACTAAGGGTCTCC
7._GC-08-158-4-01
CCATGGTTTTCGGGAACTAAGGGTCTCC
8._GC-08-158-4-01
CCATGGTTTTCGGGAACTAAGGGTCTCC
9._GC-08-158-4-01
CCATGGTTTTCGGGAACTAAGGGTCTCC
10._GC-08-159-4-02
CCATGGTTTTCGGGAACTAAGGGTCTCC
11._GC-08-159-4-02
CCATGGTTTTCGGGAACTAAGGGTCTCC
12._GC-08-159-4-02
CCATGGTTTTCGGGAACTAAGGGTCTCC
13._GC-08-159-4-02
CCATGGTTTTCGGGAACTAAGGGTCTCC
14._GC-08-158-4-01
CCATGGTTTTCGGGAACTAAGGGTCTCC
15._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
16._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
17._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
18._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
19._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
20._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
21._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
22._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
23._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
24._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
25._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
26._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
27._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
28._GC-04-043-3-07
CCATGGTTTTCGGGAACTAAGGGTCTCC
29._GC-08-158-4-01
CCATGG__TTCGGGAACTAAGGGTCTCC
30._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
31._POUND_4_/A
CCATGG__TTCGGGAACTAAGGGTCTCC
32._GC-04-043-3-07
CCATGGTTTTCGGGAACTAAGGGTCTCC
33._POUND_4_/A
CCATGGTTTTCGGGAACTAAGGGTCTCC
34._POUND_4_/A
CCAAGGCTTTCGGTAACCACCGGGCCAC
35._GC-08-159-4-02
CCAACGCTCCGGGGAGTTAC__GGTTAA
36._POUND_4_/A
CCAACGCTCCGGGGAGTTAC__GGTTAA
37._GC-08-158-4-01
CCAACGCTCCGGGGAGTT__CGGGTTAA
38._POUND_4_/A
CCAACGCTCCGGGGAGTT__CGGGTTAA
39._POUND_4_/A
CCAACGCTCCGGGGAGTTACCGGGTTAA
40._GC-08-159-4-02
CCAACGCTCCGGGGAGTTACCGGGTTAA
41._GC-08-159-4-02
CCAACGCTCCGGGGAGTTACCGGGTTAA
42._GC-08-159-4-02
CCAACGCTCCGGGGAGTTACCGGGTTAA
43._POUND_4_/A
CCAACGCTCCGGGGAGTTACCGGGTTAA
44._POUND_4_/A
CCAACGCTCCGGGGAGTTACCGGGTTAA
45._GC-08-159-4-02
CTAACGTTTTCGGGGGTTCCGGGGCCAC
46._POUND_4_/A
CTAACGTTTTCGGGGGTTCCGGGGCCAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
1._GC-08-158-4-01
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
2._GC-04-043-3-07
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
3._GC-04-043-3-07
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
4._GC-04-043-3-07
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
5._GC-04-043-3-07
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
6._GC-04-043-3-07
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
7._GC-08-158-4-01
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
8._GC-08-158-4-01
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
9._GC-08-158-4-01
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
10._GC-08-159-4-02
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
11._GC-08-159-4-02
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
12._GC-08-159-4-02
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
13._GC-08-159-4-02
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
14._GC-08-158-4-01
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
15._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
16._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
17._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
18._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
19._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
20._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
21._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
22._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
23._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
24._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
25._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
26._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
27._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
28._GC-04-043-3-07
GGGGAACTAGCGAC__GGCCTTGGX_XX_X
29._GC-08-158-4-01
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
30._POUND_4_/A
GGGGAACTAGCGAC__GGCCTTGGX_XX_X
31._POUND_4_/A
GGGGAACTAGCGACCCGGCCTTGGX_XX_X
32._GC-04-043-3-07
AGGGAACTAGCGACCCGGCCTTGGX_XX_X
33._POUND_4_/A
AGGGAACTAGCGACCCGGCCTTGGX_XX_X
34._POUND_4_/A
AAAGAACTAACGACCTGGCCTTGGX_XX_X
35._GC-08-159-4-02
AAGGAACCAGCCAACCGGAAATGGX_XX_X
36._POUND_4_/A
AAGGAACCAGCCAACCGGAAATGGX_XX_X
37._GC-08-158-4-01
AAGGAACCAGCCAACCGGAAATGGX_XX_X
38._POUND_4_/A
AAGGAACCAGCCAACCGGAAATGGX_XX_X
39._POUND_4_/A
AAGGAACCAGCCAACCGGAAATGGX_XX_X
40._GC-08-159-4-02
AAGGAACCAGCCAACCGGAAATGGX_XX_X
41._GC-08-159-4-02
AAGGAACCAGCCAACCGGAAATGGX_XX_X
42._GC-08-159-4-02
AAGGAACCAGCCAACCGGAAATGGX_XX_X
43._POUND_4_/A
AAGGAACCAGCCAACCGGAAATGGX_XX_X
44._POUND_4_/A
AAGGAACCAGCCAACCGGAAATGGX_XX_X
45._GC-08-159-4-02
AGAAATCCAGCCCCTTGGAAATCGX_XX_X
46._POUND_4_/A
AGAAATCCAGCCCCTTGGAAATCGX_XX_X

Input profile: POUND_4_/A

 
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Mars Center for Cocoa Science, Brazil
Location: 8401 11
 Dapeng Zhang, 2016

1._POUND_4_/A GC-08-158-4-01

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

2._POUND_4_/A GC-04-043-3-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._POUND_4_/A GC-04-043-3-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

4._POUND_4_/A GC-04-043-3-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._POUND_4_/A GC-04-043-3-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

6._POUND_4_/A GC-04-043-3-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

7._POUND_4_/A GC-08-158-4-01

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._POUND_4_/A GC-08-158-4-01

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._POUND_4_/A GC-08-158-4-01

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

10._POUND_4_/A GC-08-159-4-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

11._POUND_4_/A GC-08-159-4-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._POUND_4_/A GC-08-159-4-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._POUND_4_/A GC-08-159-4-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

14._POUND_4_/A GC-08-158-4-01

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._POUND_4_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4307 1
 Dapeng Zhang, 2016

16._POUND_4_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4307 2 > FP
 Dapeng Zhang, 2016

17._POUND_4_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4307 3 > FP
 Dapeng Zhang, 2016

18._POUND_4_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4307 4 > FP
 Dapeng Zhang, 2016

19._POUND_4_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4307 7 > FP
 Dapeng Zhang, 2016

20._POUND_4_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8401 5
 Dapeng Zhang, 2016

21._POUND_4_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8401 7
 Dapeng Zhang, 2016

22._POUND_4_/A

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8401 7
 Dapeng Zhang, 2016

23._POUND_4_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8401 12
 Dapeng Zhang, 2016

24._POUND_4_/A

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8402 6
 Dapeng Zhang, 2016

25._POUND_4_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 7
 Dapeng Zhang, 2016

26._POUND_4_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 9
 Dapeng Zhang, 2016

27._POUND_4_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 12
 Dapeng Zhang, 2016

28._POUND_4_/A GC-04-043-3-07

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

29._POUND_4_/A GC-08-158-4-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

30._POUND_4_/A

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4307 5
 Dapeng Zhang, 2016

31._POUND_4_/A

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8401 9
 Dapeng Zhang, 2016

32._POUND_4_/A GC-04-043-3-07

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

33._POUND_4_/A

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4307 6
 Dapeng Zhang, 2016

34._POUND_4_/A

76.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F411 T15
 Dapeng Zhang, 2016

35._POUND_4_/A GC-08-159-4-02

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._POUND_4_/A

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 5
 Dapeng Zhang, 2016

37._POUND_4_/A GC-08-158-4-01

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

38._POUND_4_/A

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8401 8
 Dapeng Zhang, 2016

39._POUND_4_/A

63.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 13
 Dapeng Zhang, 2016

40._POUND_4_/A GC-08-159-4-02

63.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

41._POUND_4_/A GC-08-159-4-02

63.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

42._POUND_4_/A GC-08-159-4-02

63.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

43._POUND_4_/A

63.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 10
 Dapeng Zhang, 2016

44._POUND_4_/A

63.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 8
 Dapeng Zhang, 2016

45._POUND_4_/A GC-08-159-4-02

60.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

46._POUND_4_/A

60.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 4
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25