SNP Profiles of POUND 25 /A   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCCCAATTGGTTAAGGCTAACCAA
1._RB_37_[BRA]___
AACCCTCCAATTGGTTAAGGCTAACCAA
2._RB_37_[BRA]___
__CC________GG____GG__AA____
3._RB_37_[BRA]___
AGCCCCCCAATTGGCTAAGGCTAACCAA
4._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
5._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
6._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
7._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
8._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
9._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
10._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
11._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
12._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
13._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
14._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
15._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
16._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
17._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
18._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
19._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
20._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
21._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
22._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
23._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
24._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
25._RB_37_[BRA]___
AACCCCCTAATTGGCTAAGGCCAACCAA
26._RB_37_[BRA]___
AAGGGGAGAAAACC__AAGGGGAAGGAA
27._RB_37_[BRA]___
AAGGGGAG__AACC__AAGGGGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CGCTTTGGGGAACCCCGGCCACGGAACT
1._RB_37_[BRA]___
CGCTTTGGGGAACCCCGGCCAC__AACT
2._RB_37_[BRA]___
______GGGGAA__CCGG__AA______
3._RB_37_[BRA]___
CGCTCTGGGGAACCCCGGCCACGGAACT
4._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
5._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
6._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
7._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
8._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
9._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
10._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
11._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
12._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
13._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
14._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
15._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
16._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
17._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
18._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
19._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
20._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
21._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
22._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAACC
23._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAACC
24._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
25._RB_37_[BRA]___
GGTTTTGGGGAACCACGGCCCCGGAATT
26._RB_37_[BRA]___
GGAAAACCCC__GGACCG__CCGGAAAA
27._RB_37_[BRA]___
GGAAAACCCC__GGACCG__CCGGAAAA
 29 30 31 32 33 34 35        
_Input profile
AACCCCGGACAAGGX_XX_XX_XX_XX_XX_XX_X
1._RB_37_[BRA]___
AACC__GGACAAGGX_XX_XX_XX_XX_XX_XX_X
2._RB_37_[BRA]___
AA______AC____X_XX_XX_XX_XX_XX_XX_X
3._RB_37_[BRA]___
AACCCCGGACAAGGX_XX_XX_XX_XX_XX_XX_X
4._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
5._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
6._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
7._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
8._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
9._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
10._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
11._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
12._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
13._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
14._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
15._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
16._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
17._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
18._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
19._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
20._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
21._RB_37_[BRA]___
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
22._RB_37_[BRA]___
AA__TTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
23._RB_37_[BRA]___
AA__TTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
24._RB_37_[BRA]___
AA__TTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
25._RB_37_[BRA]___
AA__TTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
26._RB_37_[BRA]___
AACCAACCCCAAGGX_XX_XX_XX_XX_XX_XX_X
27._RB_37_[BRA]___
AACCAACCCCAAGGX_XX_XX_XX_XX_XX_XX_X

Input profile: RB_37_[BRA]

 
 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._RB_37_[BRA]

98.5 %
33 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._RB_37_[BRA] RUQ_1705

95.8 %
12 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Pur
0.997

3._RB_37_[BRA] RUQ_135

95.7 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._RB_37_[BRA]

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

5._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

10._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

14._RB_37_[BRA]

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

15._RB_37_[BRA]

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

16._RB_37_[BRA]

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

17._RB_37_[BRA]

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

18._RB_37_[BRA]

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

19._RB_37_[BRA]

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

20._RB_37_[BRA]

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

21._RB_37_[BRA]

84.3 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016

22._RB_37_[BRA] GC-01-043-2-20

83.8 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

23._RB_37_[BRA]

83.8 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

24._RB_37_[BRA]

83.8 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

25._RB_37_[BRA] GC-01-043-2-20

83.8 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

26._RB_37_[BRA] GC-01-43-2-20

45.3 %
32 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

27._RB_37_[BRA] GC-01-43-2-20

43.5 %
31 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1414 5TcSNP1350
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP534 25TcSNP529
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP230 30TcSNP193
31TcSNP151 32TcSNP150 33TcSNP144 34TcSNP32 35TcSNP25