SNP Profiles of RB 39 [BRA] View Data

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_Input profile	GG	AA	CC	GG	CC	AA	TT	AA	AG	CC	CC	GG	GG	AC
1._RB_39_[BRA]___	GG	AA	CC	GG	CC	AA	TT	AA	__	CC	CC	__	GG	AC
2._RB_39_[BRA]___	GG	AA	AC	GG	__	AA	CT	AA	AG	AC	CC	GG	GG	AC
3._RB_39_[BRA]___	GG	AA	AC	GG	__	AA	CT	AA	AG	AC	CC	GG	GG	AC
4._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
5._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
6._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
7._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
8._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
9._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
10._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
11._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
12._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
13._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
14._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
15._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
16._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
17._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	CT	AA	AG	AC	CC	GG	GG	AC
18._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	__	AT	AG	AC	__	GG	GG	AC
19._RB_39_[BRA]___	GG	AA	AC	GG	CC	AA	__	AT	AG	AC	__	GG	GG	AC
20._RB_39_[BRA]___	GG	AA	AA	TT	AA	GG	CC	AA	GG	AA	CC	GG	CC	AC
21._RB_39_[BRA]___	GG	AA	AA	TT	AA	GG	CC	AA	GG	AA	CC	GG	CC	AC
22._RB_39_[BRA]___	GG	AA	__	CC	CC	AA	AG	AA	__	AC	__	CC	CG	AC

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_Input profile	CC	AA	GG	GG	TT	TT	GG	AA	CC	AA	CC	GG	AA	CT
1._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	GG	__	CC	__	__	GG	AA	CT
2._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	__	AA	CC	AA	__	GG	AA	TT
3._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	__	AA	CC	AA	__	GG	AA	TT
4._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
5._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
6._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
7._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
8._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
9._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
10._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
11._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
12._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
13._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
14._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
15._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
16._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
17._RB_39_[BRA]___	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT	GG	AA	TT
18._RB_39_[BRA]___	CC	__	GG	GG	TT	TT	CC	AA	CC	AA	CT	GG	__	TT
19._RB_39_[BRA]___	CC	__	GG	GG	TT	TT	CC	AA	CC	AA	CT	GG	__	TT
20._RB_39_[BRA]___	CC	AG	GG	GG	CC	CC	GG	AA	CC	GG	CC	GG	AA	CC
21._RB_39_[BRA]___	CC	AG	GG	GG	CC	CC	GG	AA	CC	GG	CC	GG	AA	CC
22._RB_39_[BRA]___	GG	__	CC	CC	AA	AA	CC	AA	GG	AA	AA	GG	AA	__

	29	30	31	32	33	34	35	36
_Input profile	GG	TT	AA	CT	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
1._RB_39_[BRA]___	GG	TT	AA	CT	CC	CC	AA	__	X_X	X_X	X_X	X_X	X_X	X_X
2._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
3._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
4._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
5._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
6._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
7._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
8._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
9._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
10._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
11._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
12._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
13._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
14._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
15._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
16._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
17._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X	X_X
18._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	__	CC	X_X	X_X	X_X	X_X	X_X	X_X
19._RB_39_[BRA]___	GG	TT	AA	CC	CC	CC	__	CC	X_X	X_X	X_X	X_X	X_X	X_X
20._RB_39_[BRA]___	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X	X_X	X_X	X_X	X_X
21._RB_39_[BRA]___	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X	X_X	X_X	X_X	X_X
22._RB_39_[BRA]___	CC	AA	AA	GG	GG	__	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: RB_39_[BRA]

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

1._RB_39_[BRA]

identical
30 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

2._RB_39_[BRA] GC-01-042-2-19

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP4

3._RB_39_[BRA]

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1215 12 > F

Dapeng Zhang, 2016

4._RB_39_[BRA]

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1215 3 > FP

Dapeng Zhang, 2016

5._RB_39_[BRA] GC-01-042-2-19

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP3

6._RB_39_[BRA] GC-01-042-2-19

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

7._RB_39_[BRA] GC-01-042-2-19

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

8._RB_39_[BRA] GC-01-042-2-19

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._RB_39_[BRA] GC-01-042-2-19

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

10._RB_39_[BRA] GC-01-042-2-19

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

11._RB_39_[BRA] GC-01-042-2-19

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._RB_39_[BRA]

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1215 11 > F

Dapeng Zhang, 2016

13._RB_39_[BRA]

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1215 1 > FP

Dapeng Zhang, 2016

14._RB_39_[BRA]

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1215 10

Dapeng Zhang, 2016

15._RB_39_[BRA]

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1215 9

Dapeng Zhang, 2016

16._RB_39_[BRA]

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1215 4

Dapeng Zhang, 2016

17._RB_39_[BRA]

87.5 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1215 2

Dapeng Zhang, 2016

18._RB_39_[BRA] GC-01-042-2-19

87.1 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

19._RB_39_[BRA]

87.1 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1215 5

Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

60 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

21._RB_39_[BRA]

60 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1215 13

Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

43.3 %
30 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 15, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP193
6	TcSNP230	7	TcSNP242	8	TcSNP372	9	TcSNP469	10	TcSNP529
11	TcSNP534	12	TcSNP560	13	TcSNP577	14	TcSNP591	15	TcSNP619
16	TcSNP645	17	TcSNP723	18	TcSNP872	19	TcSNP891	20	TcSNP917
21	TcSNP929	22	TcSNP953	23	TcSNP994	24	TcSNP998	25	TcSNP1060
26	TcSNP1062	27	TcSNP1075	28	TcSNP1165	29	TcSNP1253	30	TcSNP1270
31	TcSNP1350	32	TcSNP1414	33	TcSNP1442	34	TcSNP1458	35	TcSNP1484
36	TcSNP1520