SNP Profiles of RB 39 [BRA]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGAACCGGTTCCAATTAAGGCCCCGGAC
1._RB_39_[BRA]
GGAACCGG__CCAATTAA__CCCCGGAC
2._GC-01-042-2-19
GGAAACGGCT__AACTAAGGACCCGGAC
3._RB_39_[BRA]
GGAAACGGCT__AACTAAGGACCCGGAC
4._RB_39_[BRA]
GGAAACGGCTCCAACTAAGGACCCGGAC
5._GC-01-042-2-19
GGAAACGGCTCCAACTAAGGACCCGGAC
6._GC-01-042-2-19
GGAAACGGCTCCAACTAAGGACCCGGAC
7._GC-01-042-2-19
GGAAACGGCTCCAACTAAGGACCCGGAC
8._GC-01-042-2-19
GGAAACGGCTCCAACTAAGGACCCGGAC
9._GC-01-042-2-19
GGAAACGGCTCCAACTAAGGACCCGGAC
10._GC-01-042-2-19
GGAAACGGCTCCAACTAAGGACCCGGAC
11._GC-01-042-2-19
GGAAACGGCTCCAACTAAGGACCCGGAC
12._RB_39_[BRA]
GGAAACGGCTCCAACTAAGGACCCGGAC
13._RB_39_[BRA]
GGAAACGGCTCCAACTAAGGACCCGGAC
14._RB_39_[BRA]
GGAAACGGCTCCAACTAAGGACCCGGAC
15._RB_39_[BRA]
GGAAACGGCTCCAACTAAGGACCCGGAC
16._RB_39_[BRA]
GGAAACGGCTCCAACTAAGGACCCGGAC
17._RB_39_[BRA]
GGAAACGGCTCCAACTAAGGACCCGGAC
18._GC-01-042-2-19
GGAAACGGCTCCAA__ATGGAC__GGAC
19._RB_39_[BRA]
GGAAACGGCTCCAA__ATGGAC__GGAC
20._GC-01-042-2-19
GGAAAATTTTAAGGCCAAGGAACCCCAC
21._RB_39_[BRA]
GGAAAATTTTAAGGCCAAGGAACCCCAC
22._GC-01-42-2-19
GGAA__CCAGCCAAAGAAGGAC__CGAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAGGGGTTTTGGCCGGAACTGGTTAA
1._RB_39_[BRA]
CCAAGGGGTTTTGGCCGGAACTGGTTAA
2._GC-01-042-2-19
CCAAGGGGTTTT__CCGGAATTGGTTAA
3._RB_39_[BRA]
CCAAGGGGTTTT__CCGGAATTGGTTAA
4._RB_39_[BRA]
CCAAGGGGTTTTCCCCGGAATTGGTTAA
5._GC-01-042-2-19
CCAAGGGGTTTTCCCCGGAATTGGTTAA
6._GC-01-042-2-19
CCAAGGGGTTTTCCCCGGAATTGGTTAA
7._GC-01-042-2-19
CCAAGGGGTTTTCCCCGGAATTGGTTAA
8._GC-01-042-2-19
CCAAGGGGTTTTCCCCGGAATTGGTTAA
9._GC-01-042-2-19
CCAAGGGGTTTTCCCCGGAATTGGTTAA
10._GC-01-042-2-19
CCAAGGGGTTTTCCCCGGAATTGGTTAA
11._GC-01-042-2-19
CCAAGGGGTTTTCCCCGGAATTGGTTAA
12._RB_39_[BRA]
CCAAGGGGTTTTCCCCGGAATTGGTTAA
13._RB_39_[BRA]
CCAAGGGGTTTTCCCCGGAATTGGTTAA
14._RB_39_[BRA]
CCAAGGGGTTTTCCCCGGAATTGGTTAA
15._RB_39_[BRA]
CCAAGGGGTTTTCCCCGGAATTGGTTAA
16._RB_39_[BRA]
CCAAGGGGTTTTCCCCGGAATTGGTTAA
17._RB_39_[BRA]
CCAAGGGGTTTTCCCCGGAATTGGTTAA
18._GC-01-042-2-19
CC__GGGGTTTTCCCCGG__TTGGTTAA
19._RB_39_[BRA]
CC__GGGGTTTTCCCCGG__TTGGTTAA
20._GC-01-042-2-19
CCAGGGGGCCCCGGCCGGAACCTTTT__
21._RB_39_[BRA]
CCAGGGGGCCCCGGCCGGAACCTTTT__
22._GC-01-42-2-19
GG__CCCCAAAACCGGGGAA__CCAAAA
 29 30 31 32           
_Input profile
CTCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RB_39_[BRA]
CTCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-01-042-2-19
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RB_39_[BRA]
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RB_39_[BRA]
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-042-2-19
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-042-2-19
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-042-2-19
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-01-042-2-19
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-01-042-2-19
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-01-042-2-19
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-01-042-2-19
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RB_39_[BRA]
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._RB_39_[BRA]
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._RB_39_[BRA]
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._RB_39_[BRA]
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._RB_39_[BRA]
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._RB_39_[BRA]
CCCCCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-01-042-2-19
CCCCCC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._RB_39_[BRA]
CCCCCC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-01-042-2-19
TTCCCCGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._RB_39_[BRA]
TTCCCCGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-01-42-2-19
GGGG__AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: RB_39_[BRA]

 
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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._RB_39_[BRA]

identical
30 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._RB_39_[BRA] GC-01-042-2-19

90 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

3._RB_39_[BRA]

90 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 12 > F
 Dapeng Zhang, 2016

4._RB_39_[BRA]

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 3 > FP
 Dapeng Zhang, 2016

5._RB_39_[BRA] GC-01-042-2-19

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

6._RB_39_[BRA] GC-01-042-2-19

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._RB_39_[BRA] GC-01-042-2-19

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._RB_39_[BRA] GC-01-042-2-19

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._RB_39_[BRA] GC-01-042-2-19

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

10._RB_39_[BRA] GC-01-042-2-19

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._RB_39_[BRA] GC-01-042-2-19

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._RB_39_[BRA]

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 11 > F
 Dapeng Zhang, 2016

13._RB_39_[BRA]

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 1 > FP
 Dapeng Zhang, 2016

14._RB_39_[BRA]

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 10
 Dapeng Zhang, 2016

15._RB_39_[BRA]

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 9
 Dapeng Zhang, 2016

16._RB_39_[BRA]

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 4
 Dapeng Zhang, 2016

17._RB_39_[BRA]

87.5 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 2
 Dapeng Zhang, 2016

18._RB_39_[BRA] GC-01-042-2-19

85.2 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._RB_39_[BRA]

85.2 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 5
 Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

59.7 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

21._RB_39_[BRA]

59.7 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 13
 Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

44.4 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 15, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP529 12TcSNP534 13TcSNP577 14TcSNP591 15TcSNP619
16TcSNP645 17TcSNP723 18TcSNP872 19TcSNP891 20TcSNP917
21TcSNP929 22TcSNP994 23TcSNP1062 24TcSNP1075 25TcSNP1165
26TcSNP1253 27TcSNP1270 28TcSNP1350 29TcSNP1414 30TcSNP1442
31TcSNP1458 32TcSNP1484