SNP Profiles of POUND 25 /A   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGAAACGGCTCCGGAACTAAGGAGACCC
1._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
2._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
3._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
4._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
5._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
6._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
7._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
8._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
9._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
10._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
11._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
12._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
13._RB_39_[BRA]___
GGAAACGGCTCCGGAACTAAGGAGACCC
14._RB_39_[BRA]___
GGAAACGGCT__GGAACTAAGGAGACCC
15._RB_39_[BRA]___
GGAAACGGCT__GGAACTAAGGAGACCC
16._RB_39_[BRA]___
GGAAACGGCTCC__AA__ATGGAGAC__
17._RB_39_[BRA]___
GGAAACGGCTCC__AA__ATGGAGAC__
18._RB_39_[BRA]___
GGAACCGGTTCC__AATTAAGG__CCCC
19._RB_39_[BRA]___
GGAACCGG__CC__AATTAA__AGCCCC
20._RB_39_[BRA]___
GGAAAATTTTAACCGGCCAAGGGGAACC
21._RB_39_[BRA]___
GGAAAATTTTAACCGGCCAAGGGGAACC
22._RB_39_[BRA]___
GGAA__CCAGCCCCAAAGAAGG__AC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGGGACCCAAGGGGTTTTCCAACCAATT
1._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
2._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
3._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
4._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
5._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
6._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
7._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
8._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
9._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
10._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
11._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
12._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
13._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTCCAACCAATT
14._RB_39_[BRA]___
GGGGACCCAAGGGGTTTT__AACCAA__
15._RB_39_[BRA]___
GGGGACCCAAGGGGTTTT__AACCAA__
16._RB_39_[BRA]___
GGGGACCC__GGGGTTTTCCAACCAACT
17._RB_39_[BRA]___
GGGGACCC__GGGGTTTTCCAACCAACT
18._RB_39_[BRA]___
__GGACCCAAGGGGTTTTGG__CC____
19._RB_39_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
20._RB_39_[BRA]___
GGCCACCCAGGGGGCCCCGGAACCGGCC
21._RB_39_[BRA]___
GGCCACCCAGGGGGCCCCGGAACCGGCC
22._RB_39_[BRA]___
CCCGACGG__CCCCAAAACCAAGGAAAA
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAATTTTGGTTAACCCCCCAACCX_XX_X
1._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
2._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
3._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
4._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
5._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
6._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
7._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
8._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
9._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
10._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
11._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
12._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
13._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
14._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
15._RB_39_[BRA]___
GGAATTTTGGTTAACCCCCCAACCX_XX_X
16._RB_39_[BRA]___
GG__TTTTGGTTAACCCCCC__CCX_XX_X
17._RB_39_[BRA]___
GG__TTTTGGTTAACCCCCC__CCX_XX_X
18._RB_39_[BRA]___
GGAA__CTGGTTAACTCCCCAA__X_XX_X
19._RB_39_[BRA]___
GGAA__CTGGTTAACTCCCCAACCX_XX_X
20._RB_39_[BRA]___
GGAACCCCTTTT__TTCCCCGGCCX_XX_X
21._RB_39_[BRA]___
GGAACCCCTTTT__TTCCCCGGCCX_XX_X
22._RB_39_[BRA]___
GGAA____CCAAAAGGGG__AAGGX_XX_X

Input profile: RB_39_[BRA]

 
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Mars Center for Cocoa Science, Brazil
Location: 1215 4
 Dapeng Zhang, 2016

1._RB_39_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 3 > FP
 Dapeng Zhang, 2016

2._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

3._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

7._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._RB_39_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 11 > F
 Dapeng Zhang, 2016

10._RB_39_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 1 > FP
 Dapeng Zhang, 2016

11._RB_39_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 10
 Dapeng Zhang, 2016

12._RB_39_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 9
 Dapeng Zhang, 2016

13._RB_39_[BRA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 2
 Dapeng Zhang, 2016

14._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

15._RB_39_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 12 > F
 Dapeng Zhang, 2016

16._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._RB_39_[BRA]

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 5
 Dapeng Zhang, 2016

18._RB_39_[BRA]

87.5 %
32 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

19._RB_39_[BRA]

87.5 %
36 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

53.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

21._RB_39_[BRA]

53.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 13
 Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

47 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 15, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520