SNP Profiles of RB-39 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
1._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
2._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
3._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
4._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
5._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
6._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
7._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
8._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
9._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
10._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
11._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
12._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
13._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
14._RB_39_[BRA]___	GG	AA	AC	GG	CT	__	GG	AA	CT	AA	GG	AG	AC	CC
15._RB_39_[BRA]___	GG	AA	AC	GG	CT	__	GG	AA	CT	AA	GG	AG	AC	CC
16._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	__	AA	__	AT	GG	AG	AC	__
17._RB_39_[BRA]___	GG	AA	AC	GG	CT	CC	__	AA	__	AT	GG	AG	AC	__
18._RB_39_[BRA]___	GG	AA	CC	GG	TT	CC	__	AA	TT	AA	GG	__	CC	CC
19._RB_39_[BRA]___	GG	AA	CC	GG	__	CC	__	AA	TT	AA	__	AG	CC	CC
20._RB_39_[BRA]___	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
21._RB_39_[BRA]___	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
22._RB_39_[BRA]___	GG	AA	__	CC	AG	CC	CC	AA	AG	AA	GG	__	AC	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
1._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
2._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
3._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
4._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
5._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
6._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
7._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
8._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
9._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
10._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
11._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
12._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
13._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
14._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	__	AA	CC	AA	__
15._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	__	AA	CC	AA	__
16._RB_39_[BRA]___	GG	GG	AC	CC	__	GG	GG	TT	TT	CC	AA	CC	AA	CT
17._RB_39_[BRA]___	GG	GG	AC	CC	__	GG	GG	TT	TT	CC	AA	CC	AA	CT
18._RB_39_[BRA]___	__	GG	AC	CC	AA	GG	GG	TT	TT	GG	__	CC	__	__
19._RB_39_[BRA]___	GG	GG	AC	CC	AA	GG	GG	TT	TT	GG	AA	CC	AA	CC
20._RB_39_[BRA]___	GG	CC	AC	CC	AG	GG	GG	CC	CC	GG	AA	CC	GG	CC
21._RB_39_[BRA]___	GG	CC	AC	CC	AG	GG	GG	CC	CC	GG	AA	CC	GG	CC
22._RB_39_[BRA]___	CC	CG	AC	GG	__	CC	CC	AA	AA	CC	AA	GG	AA	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
1._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
2._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
3._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
4._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
5._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
6._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
7._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
8._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
9._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
10._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
11._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
12._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
13._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
14._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
15._RB_39_[BRA]___	GG	AA	TT	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X
16._RB_39_[BRA]___	GG	__	TT	TT	GG	TT	AA	CC	CC	CC	__	CC	X_X	X_X
17._RB_39_[BRA]___	GG	__	TT	TT	GG	TT	AA	CC	CC	CC	__	CC	X_X	X_X
18._RB_39_[BRA]___	GG	AA	__	CT	GG	TT	AA	CT	CC	CC	AA	__	X_X	X_X
19._RB_39_[BRA]___	GG	AA	__	CT	GG	TT	AA	CT	CC	CC	AA	CC	X_X	X_X
20._RB_39_[BRA]___	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
21._RB_39_[BRA]___	GG	AA	CC	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X
22._RB_39_[BRA]___	GG	AA	__	__	CC	AA	AA	GG	GG	__	AA	GG	X_X	X_X

Input profile: RB_39_[BRA]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 4

Dapeng Zhang, 2016

1._RB_39_[BRA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 3 > FP

Dapeng Zhang, 2016

2._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP3

3._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

4._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

5._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

7._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._RB_39_[BRA] GC-01-042-2-19

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._RB_39_[BRA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 11 > F

Dapeng Zhang, 2016

10._RB_39_[BRA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 1 > FP

Dapeng Zhang, 2016

11._RB_39_[BRA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 10

Dapeng Zhang, 2016

12._RB_39_[BRA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 9

Dapeng Zhang, 2016

13._RB_39_[BRA]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 2

Dapeng Zhang, 2016

14._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP4

15._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 12 > F

Dapeng Zhang, 2016

16._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._RB_39_[BRA]

97.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 5

Dapeng Zhang, 2016

18._RB_39_[BRA]

87.5 %
32 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

19._RB_39_[BRA]

87.5 %
36 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

21._RB_39_[BRA]

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 13

Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

47 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 15, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520