SNP Profiles of POUND 25 /A   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGAAACGGCTCCAAATGGAGACGGGGAC
1._RB_39_[BRA]___
GGAAACGGCTCCAAATGGAGACGGGGAC
2._RB_39_[BRA]___
GGAAACGGCT__AAAAGGAGACGGGGAC
3._RB_39_[BRA]___
GGAAACGGCT__AAAAGGAGACGGGGAC
4._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
5._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
6._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
7._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
8._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
9._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
10._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
11._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
12._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
13._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
14._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
15._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
16._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
17._RB_39_[BRA]___
GGAAACGGCTCCAAAAGGAGACGGGGAC
18._RB_39_[BRA]___
GGAACCGG__CCAAAA__AGCCGGGGAC
19._RB_39_[BRA]___
GGAACCGGTTCCAAAAGG__CC__GGAC
20._RB_39_[BRA]___
GGAAAATTTTAAGGAAGGGGAAGGCCAC
21._RB_39_[BRA]___
GGAAAATTTTAAGGAAGGGGAAGGCCAC
22._RB_39_[BRA]___
GGAA__CCAGCCAAAAGG__ACCCCGAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGTTTTCCAACCAACTGGTTTTGG
1._RB_39_[BRA]___
CCGGGGTTTTCCAACCAACTGGTTTTGG
2._RB_39_[BRA]___
CCGGGGTTTT__AACCAA__GGTTTTGG
3._RB_39_[BRA]___
CCGGGGTTTT__AACCAA__GGTTTTGG
4._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
5._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
6._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
7._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
8._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
9._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
10._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
11._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
12._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
13._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
14._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
15._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
16._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
17._RB_39_[BRA]___
CCGGGGTTTTCCAACCAATTGGTTTTGG
18._RB_39_[BRA]___
CCGGGGTTTTGGAACCAACCGG__CTGG
19._RB_39_[BRA]___
CCGGGGTTTTGG__CC____GG__CTGG
20._RB_39_[BRA]___
CCGGGGCCCCGGAACCGGCCGGCCCCTT
21._RB_39_[BRA]___
CCGGGGCCCCGGAACCGGCCGGCCCCTT
22._RB_39_[BRA]___
GGCCCCAAAACCAAGGAAAAGG____CC
 29 30 31 32 33 34         
_Input profile
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
1._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
2._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
3._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
4._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
5._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
6._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
7._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
8._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
9._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
10._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
11._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
12._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
13._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
14._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
15._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
16._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
17._RB_39_[BRA]___
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
18._RB_39_[BRA]___
TTAACTCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
19._RB_39_[BRA]___
TTAACTCCCC__X_XX_XX_XX_XX_XX_XX_XX_X
20._RB_39_[BRA]___
TT__TTCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
21._RB_39_[BRA]___
TT__TTCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
22._RB_39_[BRA]___
AAAAGGGG__GGX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: RB_39_[BRA]

 
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Mars Center for Cocoa Science, Brazil
Location: 1215 5
 Dapeng Zhang, 2016

1._RB_39_[BRA] GC-01-042-2-19

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._RB_39_[BRA] GC-01-042-2-19

98.4 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

3._RB_39_[BRA]

98.4 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 12 > F
 Dapeng Zhang, 2016

4._RB_39_[BRA]

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 3 > FP
 Dapeng Zhang, 2016

5._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

6._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

10._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._RB_39_[BRA]

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 11 > F
 Dapeng Zhang, 2016

13._RB_39_[BRA]

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 1 > FP
 Dapeng Zhang, 2016

14._RB_39_[BRA]

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 10
 Dapeng Zhang, 2016

15._RB_39_[BRA]

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 9
 Dapeng Zhang, 2016

16._RB_39_[BRA]

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 4
 Dapeng Zhang, 2016

17._RB_39_[BRA]

97.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 2
 Dapeng Zhang, 2016

18._RB_39_[BRA]

87.1 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

19._RB_39_[BRA]

85.2 %
27 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

54.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

21._RB_39_[BRA]

54.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1215 13
 Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

44.8 %
29 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 15, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP372 9TcSNP429 10TcSNP469
11TcSNP529 12TcSNP560 13TcSNP577 14TcSNP591 15TcSNP619
16TcSNP723 17TcSNP872 18TcSNP891 19TcSNP917 20TcSNP929
21TcSNP953 22TcSNP994 23TcSNP998 24TcSNP1060 25TcSNP1062
26TcSNP1144 27TcSNP1165 28TcSNP1253 29TcSNP1270 30TcSNP1350
31TcSNP1414 32TcSNP1442 33TcSNP1458 34TcSNP1520