SNP Profiles of RB 39 [BRA]   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGAAACGGCTCCAAATGGAGACGGGGAC
1._GC-01-042-2-19
GGAAACGGCTCCAAATGGAGACGGGGAC
2._GC-01-042-2-19
GGAAACGGCT__AAAAGGAGACGGGGAC
3._RB_39_[BRA]
GGAAACGGCT__AAAAGGAGACGGGGAC
4._RB_39_[BRA]
GGAAACGGCTCCAAAAGGAGACGGGGAC
5._GC-01-042-2-19
GGAAACGGCTCCAAAAGGAGACGGGGAC
6._GC-01-042-2-19
GGAAACGGCTCCAAAAGGAGACGGGGAC
7._GC-01-042-2-19
GGAAACGGCTCCAAAAGGAGACGGGGAC
8._GC-01-042-2-19
GGAAACGGCTCCAAAAGGAGACGGGGAC
9._GC-01-042-2-19
GGAAACGGCTCCAAAAGGAGACGGGGAC
10._GC-01-042-2-19
GGAAACGGCTCCAAAAGGAGACGGGGAC
11._GC-01-042-2-19
GGAAACGGCTCCAAAAGGAGACGGGGAC
12._RB_39_[BRA]
GGAAACGGCTCCAAAAGGAGACGGGGAC
13._RB_39_[BRA]
GGAAACGGCTCCAAAAGGAGACGGGGAC
14._RB_39_[BRA]
GGAAACGGCTCCAAAAGGAGACGGGGAC
15._RB_39_[BRA]
GGAAACGGCTCCAAAAGGAGACGGGGAC
16._RB_39_[BRA]
GGAAACGGCTCCAAAAGGAGACGGGGAC
17._RB_39_[BRA]
GGAAACGGCTCCAAAAGGAGACGGGGAC
18._RB_39_[BRA]
GGAACCGG__CCAAAA__AGCCGGGGAC
19._RB_39_[BRA]
GGAACCGGTTCCAAAAGG__CC__GGAC
20._GC-01-042-2-19
GGAAAATTTTAAGGAAGGGGAAGGCCAC
21._RB_39_[BRA]
GGAAAATTTTAAGGAAGGGGAAGGCCAC
22._GC-01-42-2-19
GGAA__CCAGCCAAAAGG__ACCCCGAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGTTTTCCAACCAACTGGTTTTGG
1._GC-01-042-2-19
CCGGGGTTTTCCAACCAACTGGTTTTGG
2._GC-01-042-2-19
CCGGGGTTTT__AACCAA__GGTTTTGG
3._RB_39_[BRA]
CCGGGGTTTT__AACCAA__GGTTTTGG
4._RB_39_[BRA]
CCGGGGTTTTCCAACCAATTGGTTTTGG
5._GC-01-042-2-19
CCGGGGTTTTCCAACCAATTGGTTTTGG
6._GC-01-042-2-19
CCGGGGTTTTCCAACCAATTGGTTTTGG
7._GC-01-042-2-19
CCGGGGTTTTCCAACCAATTGGTTTTGG
8._GC-01-042-2-19
CCGGGGTTTTCCAACCAATTGGTTTTGG
9._GC-01-042-2-19
CCGGGGTTTTCCAACCAATTGGTTTTGG
10._GC-01-042-2-19
CCGGGGTTTTCCAACCAATTGGTTTTGG
11._GC-01-042-2-19
CCGGGGTTTTCCAACCAATTGGTTTTGG
12._RB_39_[BRA]
CCGGGGTTTTCCAACCAATTGGTTTTGG
13._RB_39_[BRA]
CCGGGGTTTTCCAACCAATTGGTTTTGG
14._RB_39_[BRA]
CCGGGGTTTTCCAACCAATTGGTTTTGG
15._RB_39_[BRA]
CCGGGGTTTTCCAACCAATTGGTTTTGG
16._RB_39_[BRA]
CCGGGGTTTTCCAACCAATTGGTTTTGG
17._RB_39_[BRA]
CCGGGGTTTTCCAACCAATTGGTTTTGG
18._RB_39_[BRA]
CCGGGGTTTTGGAACCAACCGG__CTGG
19._RB_39_[BRA]
CCGGGGTTTTGG__CC____GG__CTGG
20._GC-01-042-2-19
CCGGGGCCCCGGAACCGGCCGGCCCCTT
21._RB_39_[BRA]
CCGGGGCCCCGGAACCGGCCGGCCCCTT
22._GC-01-42-2-19
GGCCCCAAAACCAAGGAAAAGG____CC
 29 30 31 32 33 34         
_Input profile
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-01-042-2-19
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-01-042-2-19
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
3._RB_39_[BRA]
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
4._RB_39_[BRA]
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-042-2-19
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-042-2-19
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-042-2-19
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-01-042-2-19
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-01-042-2-19
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-01-042-2-19
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-01-042-2-19
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
12._RB_39_[BRA]
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
13._RB_39_[BRA]
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
14._RB_39_[BRA]
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
15._RB_39_[BRA]
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
16._RB_39_[BRA]
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
17._RB_39_[BRA]
TTAACCCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
18._RB_39_[BRA]
TTAACTCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
19._RB_39_[BRA]
TTAACTCCCC__X_XX_XX_XX_XX_XX_XX_XX_X
20._GC-01-042-2-19
TT__TTCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
21._RB_39_[BRA]
TT__TTCCCCCCX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-01-42-2-19
AAAAGGGG__GGX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: RB_39_[BRA]

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1215 5
 Dapeng Zhang, 2016

1._RB_39_[BRA] GC-01-042-2-19

identical
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._RB_39_[BRA] GC-01-042-2-19

98.4 %
31 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

3._RB_39_[BRA]

98.4 %
31 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1215 12 > F
 Dapeng Zhang, 2016

4._RB_39_[BRA]

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1215 3 > FP
 Dapeng Zhang, 2016

5._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

6._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

10._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._RB_39_[BRA] GC-01-042-2-19

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._RB_39_[BRA]

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1215 11 > F
 Dapeng Zhang, 2016

13._RB_39_[BRA]

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1215 1 > FP
 Dapeng Zhang, 2016

14._RB_39_[BRA]

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1215 10
 Dapeng Zhang, 2016

15._RB_39_[BRA]

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1215 9
 Dapeng Zhang, 2016

16._RB_39_[BRA]

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1215 4
 Dapeng Zhang, 2016

17._RB_39_[BRA]

97.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1215 2
 Dapeng Zhang, 2016

18._RB_39_[BRA]

87.1 %
31 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

19._RB_39_[BRA]

85.2 %
27 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

54.5 %
33 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

21._RB_39_[BRA]

54.5 %
33 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1215 13
 Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

44.8 %
29 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 15, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP372 9TcSNP429 10TcSNP469
11TcSNP529 12TcSNP560 13TcSNP577 14TcSNP591 15TcSNP619
16TcSNP723 17TcSNP872 18TcSNP891 19TcSNP917 20TcSNP929
21TcSNP953 22TcSNP994 23TcSNP998 24TcSNP1060 25TcSNP1062
26TcSNP1144 27TcSNP1165 28TcSNP1253 29TcSNP1270 30TcSNP1350
31TcSNP1414 32TcSNP1442 33TcSNP1458 34TcSNP1520