SNP Profiles of POUND 25 /A   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGAAACGGCTGGAACTAAGGAGACCCGG
1._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
2._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
3._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
4._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
5._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
6._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
7._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
8._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
9._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
10._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
11._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
12._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
13._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
14._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
15._RB_39_[BRA]___
GGAAACGGCTGGAACTAAGGAGACCCGG
16._RB_39_[BRA]___
GGAAACGGCT__AA__ATGGAGAC__GG
17._RB_39_[BRA]___
GGAAACGGCT__AA__ATGGAGAC__GG
18._RB_39_[BRA]___
GGAACCGG____AATTAA__AGCCCCGG
19._RB_39_[BRA]___
GGAACCGGTT__AATTAAGG__CCCC__
20._RB_39_[BRA]___
GGAAAATTTTCCGGCCAAGGGGAACCGG
21._RB_39_[BRA]___
GGAAAATTTTCCGGCCAAGGGGAACCGG
22._RB_39_[BRA]___
GGAA__CCAGCCAAAGAAGG__AC__CC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGACCCAAGGGGTTTTAACCAAGGAATT
1._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
2._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
3._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
4._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
5._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
6._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
7._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
8._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
9._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
10._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
11._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
12._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
13._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
14._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
15._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAATT
16._RB_39_[BRA]___
GGACCC__GGGGTTTTAACCAAGG__TT
17._RB_39_[BRA]___
GGACCC__GGGGTTTTAACCAAGG__TT
18._RB_39_[BRA]___
GGACCCAAGGGGTTTTAACCAAGGAA__
19._RB_39_[BRA]___
GGACCCAAGGGGTTTT__CC__GGAA__
20._RB_39_[BRA]___
CCACCCAGGGGGCCCCAACCGGGGAACC
21._RB_39_[BRA]___
CCACCCAGGGGGCCCCAACCGGGGAACC
22._RB_39_[BRA]___
CGACGG__CCCCAAAAAAGGAAGGAA__
 29 30 31 32 33 34 35 36 37      
_Input profile
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
1._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
2._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
3._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
4._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
5._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
6._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
7._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
8._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
9._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
10._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
11._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
12._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
13._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
14._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
15._RB_39_[BRA]___
TTGGTTAACCCCCCAACCX_XX_XX_XX_XX_X
16._RB_39_[BRA]___
TTGGTTAACCCCCC__CCX_XX_XX_XX_XX_X
17._RB_39_[BRA]___
TTGGTTAACCCCCC__CCX_XX_XX_XX_XX_X
18._RB_39_[BRA]___
CTGGTTAACTCCCCAACCX_XX_XX_XX_XX_X
19._RB_39_[BRA]___
CTGGTTAACTCCCCAA__X_XX_XX_XX_XX_X
20._RB_39_[BRA]___
CCTTTT__TTCCCCGGCCX_XX_XX_XX_XX_X
21._RB_39_[BRA]___
CCTTTT__TTCCCCGGCCX_XX_XX_XX_XX_X
22._RB_39_[BRA]___
__CCAAAAGGGG__AAGGX_XX_XX_XX_XX_X

Input profile: RB_39_[BRA]

 
Mars Center for Cocoa Science, Brazil
Location: 1215 12 > F
 Dapeng Zhang, 2016

1._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 3 > FP
 Dapeng Zhang, 2016

2._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP4
 Mars, 2018

3._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

4._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

8._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 11 > F
 Dapeng Zhang, 2016

11._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 1 > FP
 Dapeng Zhang, 2016

12._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 10
 Dapeng Zhang, 2016

13._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 9
 Dapeng Zhang, 2016

14._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 4
 Dapeng Zhang, 2016

15._RB_39_[BRA]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 2
 Dapeng Zhang, 2016

16._RB_39_[BRA] GC-01-042-2-19

98.4 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._RB_39_[BRA]

98.4 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 5
 Dapeng Zhang, 2016

18._RB_39_[BRA]

92.4 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

19._RB_39_[BRA]

90 %
30 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

58.3 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

21._RB_39_[BRA]

58.3 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1215 13
 Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

45 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 15, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP226 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP953 24TcSNP994 25TcSNP998
26TcSNP1062 27TcSNP1075 28TcSNP1144 29TcSNP1165 30TcSNP1253
31TcSNP1270 32TcSNP1350 33TcSNP1414 34TcSNP1442 35TcSNP1458
36TcSNP1484 37TcSNP1520