SNP Profiles of POUND 25 /A View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
1._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
2._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
3._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
4._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
5._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
6._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
7._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
8._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
9._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
10._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
11._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
12._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
13._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
14._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
15._RB_39_[BRA]___	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
16._RB_39_[BRA]___	GG	AA	AC	GG	CT	__	AA	__	AT	GG	AG	AC	__	GG
17._RB_39_[BRA]___	GG	AA	AC	GG	CT	__	AA	__	AT	GG	AG	AC	__	GG
18._RB_39_[BRA]___	GG	AA	CC	GG	__	__	AA	TT	AA	__	AG	CC	CC	GG
19._RB_39_[BRA]___	GG	AA	CC	GG	TT	__	AA	TT	AA	GG	__	CC	CC	__
20._RB_39_[BRA]___	GG	AA	AA	TT	TT	CC	GG	CC	AA	GG	GG	AA	CC	GG
21._RB_39_[BRA]___	GG	AA	AA	TT	TT	CC	GG	CC	AA	GG	GG	AA	CC	GG
22._RB_39_[BRA]___	GG	AA	__	CC	AG	CC	AA	AG	AA	GG	__	AC	__	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
1._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
2._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
3._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
4._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
5._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
6._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
7._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
8._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
9._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
10._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
11._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
12._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
13._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
14._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
15._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
16._RB_39_[BRA]___	GG	AC	CC	__	GG	GG	TT	TT	AA	CC	AA	GG	__	TT
17._RB_39_[BRA]___	GG	AC	CC	__	GG	GG	TT	TT	AA	CC	AA	GG	__	TT
18._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	__
19._RB_39_[BRA]___	GG	AC	CC	AA	GG	GG	TT	TT	__	CC	__	GG	AA	__
20._RB_39_[BRA]___	CC	AC	CC	AG	GG	GG	CC	CC	AA	CC	GG	GG	AA	CC
21._RB_39_[BRA]___	CC	AC	CC	AG	GG	GG	CC	CC	AA	CC	GG	GG	AA	CC
22._RB_39_[BRA]___	CG	AC	GG	__	CC	CC	AA	AA	AA	GG	AA	GG	AA	__

	29	30	31	32	33	34	35	36	37
_Input profile	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
1._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
2._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
3._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
4._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
5._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
6._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
7._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
8._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
9._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
10._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
11._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
12._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
13._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
14._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
15._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
16._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	__	CC	X_X	X_X	X_X	X_X	X_X
17._RB_39_[BRA]___	TT	GG	TT	AA	CC	CC	CC	__	CC	X_X	X_X	X_X	X_X	X_X
18._RB_39_[BRA]___	CT	GG	TT	AA	CT	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
19._RB_39_[BRA]___	CT	GG	TT	AA	CT	CC	CC	AA	__	X_X	X_X	X_X	X_X	X_X
20._RB_39_[BRA]___	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X	X_X	X_X	X_X
21._RB_39_[BRA]___	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X	X_X	X_X	X_X
22._RB_39_[BRA]___	__	CC	AA	AA	GG	GG	__	AA	GG	X_X	X_X	X_X	X_X	X_X

Input profile: RB_39_[BRA]

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Mars Center for Cocoa Science, Brazil

Location: 1215 12 > F

Dapeng Zhang, 2016

1._RB_39_[BRA]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1215 3 > FP

Dapeng Zhang, 2016

2._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP4

3._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP3

4._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

5._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

6._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

8._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 11 > F

Dapeng Zhang, 2016

11._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 1 > FP

Dapeng Zhang, 2016

12._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 10

Dapeng Zhang, 2016

13._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 9

Dapeng Zhang, 2016

14._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 4

Dapeng Zhang, 2016

15._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 2

Dapeng Zhang, 2016

16._RB_39_[BRA] GC-01-042-2-19

98.4 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._RB_39_[BRA]

98.4 %
31 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1215 5

Dapeng Zhang, 2016

18._RB_39_[BRA]

92.4 %
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

19._RB_39_[BRA]

90 %
30 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

58.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

21._RB_39_[BRA]

58.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 13

Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

45 %
30 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 15, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP226	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP872
21	TcSNP891	22	TcSNP917	23	TcSNP953	24	TcSNP994	25	TcSNP998
26	TcSNP1062	27	TcSNP1075	28	TcSNP1144	29	TcSNP1165	30	TcSNP1253
31	TcSNP1270	32	TcSNP1350	33	TcSNP1414	34	TcSNP1442	35	TcSNP1458
36	TcSNP1484	37	TcSNP1520