SNP Profiles of RB 39 [BRA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
1._RB_39_[BRA]	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
2._GC-01-042-2-19	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
3._GC-01-042-2-19	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
4._GC-01-042-2-19	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
5._GC-01-042-2-19	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
6._GC-01-042-2-19	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
7._GC-01-042-2-19	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
8._GC-01-042-2-19	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
9._GC-01-042-2-19	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
10._RB_39_[BRA]	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
11._RB_39_[BRA]	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
12._RB_39_[BRA]	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
13._RB_39_[BRA]	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
14._RB_39_[BRA]	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
15._RB_39_[BRA]	GG	AA	AC	GG	CT	GG	AA	CT	AA	GG	AG	AC	CC	GG
16._GC-01-042-2-19	GG	AA	AC	GG	CT	__	AA	__	AT	GG	AG	AC	__	GG
17._RB_39_[BRA]	GG	AA	AC	GG	CT	__	AA	__	AT	GG	AG	AC	__	GG
18._RB_39_[BRA]	GG	AA	CC	GG	__	__	AA	TT	AA	__	AG	CC	CC	GG
19._RB_39_[BRA]	GG	AA	CC	GG	TT	__	AA	TT	AA	GG	__	CC	CC	__
20._GC-01-042-2-19	GG	AA	AA	TT	TT	CC	GG	CC	AA	GG	GG	AA	CC	GG
21._RB_39_[BRA]	GG	AA	AA	TT	TT	CC	GG	CC	AA	GG	GG	AA	CC	GG
22._GC-01-42-2-19	GG	AA	__	CC	AG	CC	AA	AG	AA	GG	__	AC	__	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
1._RB_39_[BRA]	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
2._GC-01-042-2-19	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
3._GC-01-042-2-19	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
4._GC-01-042-2-19	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
5._GC-01-042-2-19	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
6._GC-01-042-2-19	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
7._GC-01-042-2-19	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
8._GC-01-042-2-19	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
9._GC-01-042-2-19	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
10._RB_39_[BRA]	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
11._RB_39_[BRA]	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
12._RB_39_[BRA]	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
13._RB_39_[BRA]	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
14._RB_39_[BRA]	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
15._RB_39_[BRA]	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	TT
16._GC-01-042-2-19	GG	AC	CC	__	GG	GG	TT	TT	AA	CC	AA	GG	__	TT
17._RB_39_[BRA]	GG	AC	CC	__	GG	GG	TT	TT	AA	CC	AA	GG	__	TT
18._RB_39_[BRA]	GG	AC	CC	AA	GG	GG	TT	TT	AA	CC	AA	GG	AA	__
19._RB_39_[BRA]	GG	AC	CC	AA	GG	GG	TT	TT	__	CC	__	GG	AA	__
20._GC-01-042-2-19	CC	AC	CC	AG	GG	GG	CC	CC	AA	CC	GG	GG	AA	CC
21._RB_39_[BRA]	CC	AC	CC	AG	GG	GG	CC	CC	AA	CC	GG	GG	AA	CC
22._GC-01-42-2-19	CG	AC	GG	__	CC	CC	AA	AA	AA	GG	AA	GG	AA	__

	29	30	31	32	33	34	35	36	37
_Input profile	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
1._RB_39_[BRA]	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
2._GC-01-042-2-19	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
3._GC-01-042-2-19	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
4._GC-01-042-2-19	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
5._GC-01-042-2-19	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
6._GC-01-042-2-19	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
7._GC-01-042-2-19	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
8._GC-01-042-2-19	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
9._GC-01-042-2-19	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
10._RB_39_[BRA]	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
11._RB_39_[BRA]	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
12._RB_39_[BRA]	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
13._RB_39_[BRA]	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
14._RB_39_[BRA]	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
15._RB_39_[BRA]	TT	GG	TT	AA	CC	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
16._GC-01-042-2-19	TT	GG	TT	AA	CC	CC	CC	__	CC	X_X	X_X	X_X	X_X	X_X
17._RB_39_[BRA]	TT	GG	TT	AA	CC	CC	CC	__	CC	X_X	X_X	X_X	X_X	X_X
18._RB_39_[BRA]	CT	GG	TT	AA	CT	CC	CC	AA	CC	X_X	X_X	X_X	X_X	X_X
19._RB_39_[BRA]	CT	GG	TT	AA	CT	CC	CC	AA	__	X_X	X_X	X_X	X_X	X_X
20._GC-01-042-2-19	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X	X_X	X_X	X_X
21._RB_39_[BRA]	CC	TT	TT	__	TT	CC	CC	GG	CC	X_X	X_X	X_X	X_X	X_X
22._GC-01-42-2-19	__	CC	AA	AA	GG	GG	__	AA	GG	X_X	X_X	X_X	X_X	X_X

Input profile: RB_39_[BRA]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 12 > F

Dapeng Zhang, 2016

1._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 3 > FP

Dapeng Zhang, 2016

2._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP4

3._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP3

4._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

5._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

6._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

8._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._RB_39_[BRA] GC-01-042-2-19

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 11 > F

Dapeng Zhang, 2016

11._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 1 > FP

Dapeng Zhang, 2016

12._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 10

Dapeng Zhang, 2016

13._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 9

Dapeng Zhang, 2016

14._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 4

Dapeng Zhang, 2016

15._RB_39_[BRA]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 2

Dapeng Zhang, 2016

16._RB_39_[BRA] GC-01-042-2-19

98.4 %
31 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._RB_39_[BRA]

98.4 %
31 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 5

Dapeng Zhang, 2016

18._RB_39_[BRA]

92.4 %
33 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

19._RB_39_[BRA]

90 %
30 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

20._RB_39_[BRA] GC-01-042-2-19

58.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

21._RB_39_[BRA]

58.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 13

Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

45 %
30 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 15, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP226	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP872
21	TcSNP891	22	TcSNP917	23	TcSNP953	24	TcSNP994	25	TcSNP998
26	TcSNP1062	27	TcSNP1075	28	TcSNP1144	29	TcSNP1165	30	TcSNP1253
31	TcSNP1270	32	TcSNP1350	33	TcSNP1414	34	TcSNP1442	35	TcSNP1458
36	TcSNP1484	37	TcSNP1520