SNP Profiles of RB 39 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
1._GC-01-042-2-19	GG	AA	AA	TT	TT	AA	CC	GG	CC	AA	GG	GG	AA	CC
2._RB_39_[BRA]	GG	AA	CC	GG	__	CC	__	AA	TT	AA	__	AG	CC	CC
3._RB_39_[BRA]	GG	AA	CC	GG	TT	CC	__	AA	TT	AA	GG	__	CC	CC
4._RB_39_[BRA]	GG	AA	AC	GG	CT	__	GG	AA	CT	AA	GG	AG	AC	CC
5._GC-01-042-2-19	GG	AA	AC	GG	CT	__	GG	AA	CT	AA	GG	AG	AC	CC
6._GC-01-042-2-19	GG	AA	AC	GG	CT	CC	__	AA	__	AT	GG	AG	AC	__
7._RB_39_[BRA]	GG	AA	AC	GG	CT	CC	__	AA	__	AT	GG	AG	AC	__
8._GC-01-042-2-19	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
9._GC-01-042-2-19	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
10._GC-01-042-2-19	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
11._GC-01-042-2-19	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
12._GC-01-042-2-19	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
13._GC-01-042-2-19	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
14._GC-01-042-2-19	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
15._RB_39_[BRA]	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
16._RB_39_[BRA]	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
17._RB_39_[BRA]	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
18._RB_39_[BRA]	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
19._RB_39_[BRA]	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
20._RB_39_[BRA]	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
21._RB_39_[BRA]	GG	AA	AC	GG	CT	CC	GG	AA	CT	AA	GG	AG	AC	CC
22._GC-01-42-2-19	GG	AA	__	CC	AG	CC	CC	AA	AG	AA	GG	__	AC	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	AC	CC	AG	GG	GG	CC	CC	GG	AA	CC	GG	CC
1._GC-01-042-2-19	GG	CC	AC	CC	AG	GG	GG	CC	CC	GG	AA	CC	GG	CC
2._RB_39_[BRA]	GG	GG	AC	CC	AA	GG	GG	TT	TT	GG	AA	CC	AA	CC
3._RB_39_[BRA]	__	GG	AC	CC	AA	GG	GG	TT	TT	GG	__	CC	__	__
4._RB_39_[BRA]	GG	GG	AC	CC	AA	GG	GG	TT	TT	__	AA	CC	AA	__
5._GC-01-042-2-19	GG	GG	AC	CC	AA	GG	GG	TT	TT	__	AA	CC	AA	__
6._GC-01-042-2-19	GG	GG	AC	CC	__	GG	GG	TT	TT	CC	AA	CC	AA	CT
7._RB_39_[BRA]	GG	GG	AC	CC	__	GG	GG	TT	TT	CC	AA	CC	AA	CT
8._GC-01-042-2-19	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
9._GC-01-042-2-19	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
10._GC-01-042-2-19	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
11._GC-01-042-2-19	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
12._GC-01-042-2-19	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
13._GC-01-042-2-19	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
14._GC-01-042-2-19	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
15._RB_39_[BRA]	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
16._RB_39_[BRA]	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
17._RB_39_[BRA]	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
18._RB_39_[BRA]	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
19._RB_39_[BRA]	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
20._RB_39_[BRA]	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
21._RB_39_[BRA]	GG	GG	AC	CC	AA	GG	GG	TT	TT	CC	AA	CC	AA	TT
22._GC-01-42-2-19	CC	CG	AC	GG	__	CC	CC	AA	AA	CC	AA	GG	AA	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	CC	TT	TT	TT	CC	CC	GG	CC	X_X	X_X	X_X
1._GC-01-042-2-19	GG	AA	CC	CC	TT	TT	TT	CC	CC	GG	CC	X_X	X_X	X_X
2._RB_39_[BRA]	GG	AA	__	CT	GG	TT	CT	CC	CC	AA	CC	X_X	X_X	X_X
3._RB_39_[BRA]	GG	AA	__	CT	GG	TT	CT	CC	CC	AA	__	X_X	X_X	X_X
4._RB_39_[BRA]	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
5._GC-01-042-2-19	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
6._GC-01-042-2-19	GG	__	TT	TT	GG	TT	CC	CC	CC	__	CC	X_X	X_X	X_X
7._RB_39_[BRA]	GG	__	TT	TT	GG	TT	CC	CC	CC	__	CC	X_X	X_X	X_X
8._GC-01-042-2-19	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
9._GC-01-042-2-19	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
10._GC-01-042-2-19	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
11._GC-01-042-2-19	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
12._GC-01-042-2-19	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
13._GC-01-042-2-19	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
14._GC-01-042-2-19	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
15._RB_39_[BRA]	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
16._RB_39_[BRA]	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
17._RB_39_[BRA]	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
18._RB_39_[BRA]	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
19._RB_39_[BRA]	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
20._RB_39_[BRA]	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
21._RB_39_[BRA]	GG	AA	TT	TT	GG	TT	CC	CC	CC	AA	CC	X_X	X_X	X_X
22._GC-01-42-2-19	GG	AA	__	__	CC	AA	GG	GG	__	AA	GG	X_X	X_X	X_X

Input profile: RB_39_[BRA]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 13

Dapeng Zhang, 2016

1._RB_39_[BRA] GC-01-042-2-19

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

2._RB_39_[BRA]

60 %
35 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

3._RB_39_[BRA]

59.7 %
31 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

4._RB_39_[BRA]

58.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 12 > F

Dapeng Zhang, 2016

5._RB_39_[BRA] GC-01-042-2-19

58.3 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP4

6._RB_39_[BRA] GC-01-042-2-19

54.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._RB_39_[BRA]

54.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 5

Dapeng Zhang, 2016

8._RB_39_[BRA] GC-01-042-2-19

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP3

9._RB_39_[BRA] GC-01-042-2-19

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

10._RB_39_[BRA] GC-01-042-2-19

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

11._RB_39_[BRA] GC-01-042-2-19

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._RB_39_[BRA] GC-01-042-2-19

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

13._RB_39_[BRA] GC-01-042-2-19

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

14._RB_39_[BRA] GC-01-042-2-19

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

15._RB_39_[BRA]

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 3 > FP

Dapeng Zhang, 2016

16._RB_39_[BRA]

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 11 > F

Dapeng Zhang, 2016

17._RB_39_[BRA]

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 1 > FP

Dapeng Zhang, 2016

18._RB_39_[BRA]

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 10

Dapeng Zhang, 2016

19._RB_39_[BRA]

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 9

Dapeng Zhang, 2016

20._RB_39_[BRA]

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 4

Dapeng Zhang, 2016

21._RB_39_[BRA]

53.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1215 2

Dapeng Zhang, 2016

22._RB_39_[BRA] GC-01-42-2-19

31.3 %
32 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 15, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1414
36	TcSNP1442	37	TcSNP1458	38	TcSNP1484	39	TcSNP1520