SNP Profiles of SCA 5 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
1._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
2._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
3._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
4._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
5._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
6._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
7._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
8._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
9._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
10._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
11._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
12._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
13._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
14._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
15._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
16._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
17._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
18._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
19._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
20._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
21._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
22._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
23._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG
24._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	CC	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
1._GC-01-092-5-09	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
2._SCA_5	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
3._SCA_5	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
4._SCA_5	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
5._GC-01-092-5-09	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
6._GC-01-092-5-09	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
7._GC-01-092-5-09	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
8._GC-01-092-5-09	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
9._SCA_5	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
10._GC-01-092-5-09	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
11._GC-01-092-5-09	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
12._GC-01-092-5-09	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
13._GC-01-092-5-09	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
14._GC-01-092-5-09	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
15._GC-01-092-5-09	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
16._GC-01-092-5-09	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
17._SCA_5	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
18._SCA_5	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
19._SCA_5	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
20._SCA_5	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
21._SCA_5	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
22._SCA_5	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
23._SCA_5	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG
24._SCA_5	CC	CC	TT	GG	GG	CC	TT	CT	CG	TT	CC	AA	CC	GG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
1._GC-01-092-5-09	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
2._SCA_5	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
3._SCA_5	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
4._SCA_5	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
5._GC-01-092-5-09	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
6._GC-01-092-5-09	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
7._GC-01-092-5-09	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
8._GC-01-092-5-09	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
9._SCA_5	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
10._GC-01-092-5-09	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
11._GC-01-092-5-09	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
12._GC-01-092-5-09	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
13._GC-01-092-5-09	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
14._GC-01-092-5-09	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
15._GC-01-092-5-09	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
16._GC-01-092-5-09	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
17._SCA_5	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
18._SCA_5	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
19._SCA_5	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
20._SCA_5	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
21._SCA_5	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
22._SCA_5	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
23._SCA_5	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X
24._SCA_5	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X	X_X

Input profile: SCA_5

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 8

Dapeng Zhang, 2016

1._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

2._SCA_5

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 4 > FP

Dapeng Zhang, 2016

3._SCA_5

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 5 > FP

Dapeng Zhang, 2016

4._SCA_5

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 9 > FP

Dapeng Zhang, 2016

5._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

7._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

8._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

9._SCA_5

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 13 > F

Dapeng Zhang, 2016

10._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

11._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

12._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

13._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

14._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP3

15._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

16._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

17._SCA_5

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 15

Dapeng Zhang, 2016

18._SCA_5

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 14

Dapeng Zhang, 2016

19._SCA_5

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 12

Dapeng Zhang, 2016

20._SCA_5

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 11

Dapeng Zhang, 2016

21._SCA_5

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 10

Dapeng Zhang, 2016

22._SCA_5

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 6

Dapeng Zhang, 2016

23._SCA_5

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

24._SCA_5

98.7 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A25 T2

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP872
21	TcSNP891	22	TcSNP917	23	TcSNP929	24	TcSNP953	25	TcSNP994
26	TcSNP998	27	TcSNP1060	28	TcSNP1062	29	TcSNP1075	30	TcSNP1144
31	TcSNP1165	32	TcSNP1253	33	TcSNP1270	34	TcSNP1350	35	TcSNP1414
36	TcSNP1442	37	TcSNP1458	38	TcSNP1484	39	TcSNP1520