SNP Profiles of SCA 5 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
1._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
2._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
3._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
4._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
5._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
6._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
7._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
8._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
9._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
10._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
11._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
12._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
13._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
14._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
15._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
16._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
17._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
18._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
19._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
20._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
21._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC
22._GC-01-092-5-09	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	_	CC
23._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	_	CC
24._SCA_5	CG	AA	AC	GG	TT	CC	CC	GG	CT	AA	AA	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
1._SCA_5	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
2._SCA_5	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
3._SCA_5	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
4._GC-01-092-5-09	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
5._GC-01-092-5-09	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
6._GC-01-092-5-09	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
7._GC-01-092-5-09	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
8._SCA_5	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
9._GC-01-092-5-09	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
10._GC-01-092-5-09	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
11._GC-01-092-5-09	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
12._GC-01-092-5-09	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
13._GC-01-092-5-09	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
14._GC-01-092-5-09	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
15._GC-01-092-5-09	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
16._SCA_5	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
17._SCA_5	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
18._SCA_5	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
19._SCA_5	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
20._SCA_5	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
21._SCA_5	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
22._GC-01-092-5-09	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
23._SCA_5	GG	CC	CC	TT	AG	GG	CC	TT	CT	CG	TT	CC	AA	CC
24._SCA_5	GG	CC	CC	TT	GG	GG	CC	TT	CT	CG	TT	CC	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
1._SCA_5	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
2._SCA_5	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
3._SCA_5	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
4._GC-01-092-5-09	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
5._GC-01-092-5-09	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
6._GC-01-092-5-09	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
7._GC-01-092-5-09	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
8._SCA_5	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
9._GC-01-092-5-09	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
10._GC-01-092-5-09	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
11._GC-01-092-5-09	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
12._GC-01-092-5-09	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
13._GC-01-092-5-09	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
14._GC-01-092-5-09	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
15._GC-01-092-5-09	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
16._SCA_5	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
17._SCA_5	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
18._SCA_5	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
19._SCA_5	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
20._SCA_5	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
21._SCA_5	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
22._GC-01-092-5-09	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
23._SCA_5	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X
24._SCA_5	GG	AT	CC	TT	GT	TT	CC	CT	TT	CC	AA	CC	X_X	X_X

Input profile: SCA_5

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 4 > FP

Dapeng Zhang, 2016

1._SCA_5

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 13 > F

Dapeng Zhang, 2016

2._SCA_5

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 5 > FP

Dapeng Zhang, 2016

3._SCA_5

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 9 > FP

Dapeng Zhang, 2016

4._SCA_5 GC-01-092-5-09

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._SCA_5 GC-01-092-5-09

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

6._SCA_5 GC-01-092-5-09

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

7._SCA_5 GC-01-092-5-09

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

8._SCA_5

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 15

Dapeng Zhang, 2016

9._SCA_5 GC-01-092-5-09

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

10._SCA_5 GC-01-092-5-09

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

11._SCA_5 GC-01-092-5-09

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

12._SCA_5 GC-01-092-5-09

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

13._SCA_5 GC-01-092-5-09

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP3

14._SCA_5 GC-01-092-5-09

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

15._SCA_5 GC-01-092-5-09

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

16._SCA_5

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 14

Dapeng Zhang, 2016

17._SCA_5

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 12

Dapeng Zhang, 2016

18._SCA_5

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 11

Dapeng Zhang, 2016

19._SCA_5

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 10

Dapeng Zhang, 2016

20._SCA_5

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 6

Dapeng Zhang, 2016

21._SCA_5

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

22._SCA_5 GC-01-092-5-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

23._SCA_5

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1509 8

Dapeng Zhang, 2016

24._SCA_5

98.8 %
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A25 T2

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520