SNP Profiles of OC 61 [VEN]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGTTCCGTCTACCGAGCTAAGGAGCCCT
1._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
2._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
3._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
4._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
5._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
6._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
7._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
8._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
9._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
10._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
11._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
12._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
13._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
14._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
15._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
16._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
17._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
18._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
19._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
20._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
21._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
22._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
23._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
24._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
25._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
26._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
27._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
28._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
29._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
30._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
31._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
32._SGU_54___
GGTTACGTCTAACCAGTTAAGGAGCCCT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTCCACTTAGGTGGCCTTGGAATTAGCC
1._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
2._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
3._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
4._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
5._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
6._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
7._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
8._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
9._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
10._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
11._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
12._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
13._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
14._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
15._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
16._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
17._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
18._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
19._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
20._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
21._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
22._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
23._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
24._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
25._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
26._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
27._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
28._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
29._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
30._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
31._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
32._SGU_54___
GTCCACCTAGGGCGCTCTGGAATTAACT
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAAATTCTGTCCAATTCTCGAACTX_XX_X
1._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
2._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
3._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
4._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
5._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
6._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
7._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
8._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
9._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
10._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
11._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
12._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
13._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
14._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
15._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
16._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
17._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
18._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
19._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
20._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
21._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
22._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
23._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
24._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
25._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
26._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
27._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
28._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
29._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
30._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
31._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
32._SGU_54___
AGAACTCCTTCTACTTCTGGAGCTX_XX_X

Input profile: SGU_54

 
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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

3._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

4._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

5._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

15._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 1
 Dapeng Zhang, 2016

18._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 4 > FP
 Dapeng Zhang, 2016

19._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 16 > F
 Dapeng Zhang, 2016

20._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 14 > F
 Dapeng Zhang, 2016

21._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 14 > F
 Dapeng Zhang, 2016

22._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 13
 Dapeng Zhang, 2016

23._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 12
 Dapeng Zhang, 2016

24._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 11
 Dapeng Zhang, 2016

25._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 10
 Dapeng Zhang, 2016

26._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 9
 Dapeng Zhang, 2016

27._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 8
 Dapeng Zhang, 2016

28._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 7
 Dapeng Zhang, 2016

29._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 6
 Dapeng Zhang, 2016

30._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 5
 Dapeng Zhang, 2016

31._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 3
 Dapeng Zhang, 2016

32._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 2
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520