SNP Profiles of VB 663   View Data

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 Key

 1234567891011121314
_Input profile
CCAACCGTCTCCCCAACCATAGAGAACC
1._GC-04-012-1-12
CCAACCGTCTCCCCAACCATAGAGAACC
2._GC-04-011-1-11
CCAACCGTCTCCCCAACCATAGAGAACC
3._GC-04-011-1-11
CCAACCGTCTCCCCAACCATAGAGAACC
4._GC-04-011-1-11
CCAACCGTCTCCCCAACCATAGAGAACC
5._GC-04-011-1-11
CCAACCGTCTCCCCAACCATAGAGAACC
6._GC-04-011-1-11
CCAACCGTCTCCCCAACCATAGAGAACC
7._GC-04-011-1-11
CCAACCGTCTCCCCAACCATAGAGAACC
8._GC-04-012-1-12
CCAACCGTCTCCCCAACCATAGAGAACC
9._GC-04-012-1-12
CCAACCGTCTCCCCAACCATAGAGAACC
10._GC-04-012-1-12
CCAACCGTCTCCCCAACCATAGAGAACC
11._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
12._GC-04-012-1-12
CCAACCGTCTCCCCAACCATAGAGAACC
13._GC-04-012-1-12
CCAACCGTCTCCCCAACCATAGAGAACC
14._GC-04-012-1-12
CCAACCGTCTCCCCAACCATAGAGAACC
15._GC-08-108-3-07
CCAACCGTCTCCCCAACCATAGAGAACC
16._GC-08-108-3-07
CCAACCGTCTCCCCAACCATAGAGAACC
17._GC-08-108-3-07
CCAACCGTCTCCCCAACCATAGAGAACC
18._GC-08-108-3-07
CCAACCGTCTCCCCAACCATAGAGAACC
19._GC-08-108-3-07
CCAACCGTCTCCCCAACCATAGAGAACC
20._GC-08-108-3-07
CCAACCGTCTCCCCAACCATAGAGAACC
21._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
22._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
23._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
24._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
25._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
26._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
27._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
28._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
29._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
30._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
31._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
32._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
33._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
34._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
35._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
36._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
37._VB_663
CCAACCGTCTCCCCAACCATAGAGAACC
38._GC-04-012-1-12
CCAACCGTCT_CCAACCATAGAGAACC
39._VB_663
CCAACCGTCT_CCAACCATAGAGAACC
40._RUQ_1036
__CCGTCTCCCCAACCAT_AGAACC
41._RUQ_1036
CCAACCGTCTCCCCAACCATAGAGAACC
 1516171819202122232425262728
_Input profile
GTCCCCCTAAGTCGCTCTCGATCTAATT
1._GC-04-012-1-12
GTCCCCCTAAGTCGCTCTCGATCTAATT
2._GC-04-011-1-11
GTCCCCCTAAGTCGCTCTCGATCTAATT
3._GC-04-011-1-11
GTCCCCCTAAGTCGCTCTCGATCTAATT
4._GC-04-011-1-11
GTCCCCCTAAGTCGCTCTCGATCTAATT
5._GC-04-011-1-11
GTCCCCCTAAGTCGCTCTCGATCTAATT
6._GC-04-011-1-11
GTCCCCCTAAGTCGCTCTCGATCTAATT
7._GC-04-011-1-11
GTCCCCCTAAGTCGCTCTCGATCTAATT
8._GC-04-012-1-12
GTCCCCCTAAGTCGCTCTCGATCTAATT
9._GC-04-012-1-12
GTCCCCCTAAGTCGCTCTCGATCTAATT
10._GC-04-012-1-12
GTCCCCCTAAGTCGCTCTCGATCTAATT
11._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
12._GC-04-012-1-12
GTCCCCCTAAGTCGCTCTCGATCTAATT
13._GC-04-012-1-12
GTCCCCCTAAGTCGCTCTCGATCTAATT
14._GC-04-012-1-12
GTCCCCCTAAGTCGCTCTCGATCTAATT
15._GC-08-108-3-07
GTCCCCCTAAGTCGCTCTCGATCTAATT
16._GC-08-108-3-07
GTCCCCCTAAGTCGCTCTCGATCTAATT
17._GC-08-108-3-07
GTCCCCCTAAGTCGCTCTCGATCTAATT
18._GC-08-108-3-07
GTCCCCCTAAGTCGCTCTCGATCTAATT
19._GC-08-108-3-07
GTCCCCCTAAGTCGCTCTCGATCTAATT
20._GC-08-108-3-07
GTCCCCCTAAGTCGCTCTCGATCTAATT
21._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
22._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
23._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
24._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
25._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
26._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
27._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
28._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
29._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
30._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
31._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
32._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
33._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
34._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
35._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
36._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
37._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
38._GC-04-012-1-12
GTCCCCCTAAGTCGCTCTCGATCTAATT
39._VB_663
GTCCCCCTAAGTCGCTCTCGATCTAATT
40._RUQ_1036
GTCCCCCT_GTCGCT____AATT
41._RUQ_1036
GTCCCCCTAAGTCGCTCTCGATCTAATT
 293031323334353637383940  
_Input profile
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
1._GC-04-012-1-12
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
2._GC-04-011-1-11
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
3._GC-04-011-1-11
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
4._GC-04-011-1-11
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
5._GC-04-011-1-11
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
6._GC-04-011-1-11
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
7._GC-04-011-1-11
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
8._GC-04-012-1-12
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
9._GC-04-012-1-12
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
10._GC-04-012-1-12
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
11._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
12._GC-04-012-1-12
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
13._GC-04-012-1-12
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
14._GC-04-012-1-12
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
15._GC-08-108-3-07
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
16._GC-08-108-3-07
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
17._GC-08-108-3-07
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
18._GC-08-108-3-07
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
19._GC-08-108-3-07
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
20._GC-08-108-3-07
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
21._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
22._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
23._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
24._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
25._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
26._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
27._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
28._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
29._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
30._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
31._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
32._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
33._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
34._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
35._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
36._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
37._VB_663
GGTTCTCTGTCTACCCCCCGAACCX_XX_X
38._GC-04-012-1-12
GGTTCTCTGT_ACCCCCCGAACCX_XX_X
39._VB_663
GGTTCTCTGT_ACCCCCCGAACCX_XX_X
40._RUQ_1036
____GT___CCCGAA_X_XX_X
41._RUQ_1036
GGTTCTCTGTCTACCCCCCGAGCCX_XX_X

Input profile: VB_663

 
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Mars Center for Cocoa Science, Brazil
Location: 8307 6
 Dapeng Zhang, 2016

1._VB_663 GC-04-012-1-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._VB_663 GC-04-011-1-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._VB_663 GC-04-011-1-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._VB_663 GC-04-011-1-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

5._VB_663 GC-04-011-1-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._VB_663 GC-04-011-1-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

7._VB_663 GC-04-011-1-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._VB_663 GC-04-012-1-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._VB_663 GC-04-012-1-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._VB_663 GC-04-012-1-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8307 9
 Dapeng Zhang, 2016

12._VB_663 GC-04-012-1-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._VB_663 GC-04-012-1-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

14._VB_663 GC-04-012-1-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._VB_663 GC-08-108-3-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._VB_663 GC-08-108-3-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._VB_663 GC-08-108-3-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

18._VB_663 GC-08-108-3-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

19._VB_663 GC-08-108-3-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._VB_663 GC-08-108-3-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

21._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8307 8
 Dapeng Zhang, 2016

22._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4111 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

23._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4111 7
 Dapeng Zhang, 2016

24._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4111 8
 Dapeng Zhang, 2016

25._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4111 1 > FP
 Dapeng Zhang, 2016

26._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4111 3 > FP
 Dapeng Zhang, 2016

27._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4111 4 > FP
 Dapeng Zhang, 2016

28._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4112 1
 Dapeng Zhang, 2016

29._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4112 2
 Dapeng Zhang, 2016

30._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4112 3
 Dapeng Zhang, 2016

31._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4112 5
 Dapeng Zhang, 2016

32._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4112 6
 Dapeng Zhang, 2016

33._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4112 8
 Dapeng Zhang, 2016

34._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4112 7 > FP
 Dapeng Zhang, 2016

35._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8307 2
 Dapeng Zhang, 2016

36._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8307 3
 Dapeng Zhang, 2016

37._VB_663

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8307 5
 Dapeng Zhang, 2016

38._VB_663 GC-04-012-1-12

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

39._VB_663

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4112 4
 Dapeng Zhang, 2016

40._VB_663 RUQ_1036

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

41._VB_663 RUQ_1036

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520