SNP Profiles of OC 61 [VEN] View Data

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_Input profile	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	CT
1._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
2._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
3._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
4._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
5._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
6._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
7._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
8._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
9._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
10._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
11._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
12._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
13._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
14._ICS_1___	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	__	CC	TT
15._ICS_1___	__	__	AA	__	__	__	__	AG	__	__	__	__	AC	__
16._ICS_1___	__	__	AA	__	__	__	__	AG	__	__	__	__	AC	__
17._ICS_1___	__	__	AA	__	CC	AA	CG	AG	__	AT	__	__	__	__
18._ICS_1___	__	__	AA	GT	CC	AA	CG	AG	CT	AT	__	AG	CC	TT
19._ICS_1___	GG	AT	AC	GT	CC	AA	CC	AA	CC	AA	GG	AG	AA	CT
20._ICS_1___	__	__	CC	__	CT	AC	CG	AG	__	TT	__	__	__	__
21._ICS_1___	GG	AT	AA	AC	GG	AA	CG	AG	AG	AT	GG	__	CC	__
22._ICS_1___	GG	AT	AA	AC	GG	AA	CG	AG	AG	AT	GG	__	CC	__
23._ICS_1___	GG	AT	AA	AC	GG	AA	CG	AG	AG	AT	GG	__	CC	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
1._ICS_1___	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
2._ICS_1___	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
3._ICS_1___	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
4._ICS_1___	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
5._ICS_1___	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
6._ICS_1___	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
7._ICS_1___	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
8._ICS_1___	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
9._ICS_1___	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
10._ICS_1___	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
11._ICS_1___	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
12._ICS_1___	TT	__	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
13._ICS_1___	TT	__	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
14._ICS_1___	TT	CC	AC	TT	GG	GT	__	CC	TT	GG	AA	TT	AG	TT
15._ICS_1___	__	CC	AC	__	GG	GT	CG	__	__	__	__	__	AG	__
16._ICS_1___	__	CC	AC	__	GG	GT	CG	__	__	__	__	__	AG	__
17._ICS_1___	__	CC	AC	__	__	__	CG	CC	__	__	__	TT	__	TT
18._ICS_1___	TT	CC	AA	TT	__	GT	CG	CC	__	__	__	__	AG	TT
19._ICS_1___	GG	CG	CC	TT	AA	GG	GG	CC	TT	CG	AA	TT	AG	CC
20._ICS_1___	__	CC	CC	__	__	__	CG	CT	__	__	__	CT	__	CC
21._ICS_1___	AA	CC	AC	AA	__	AC	CG	GG	AA	GG	AA	AA	AG	AA
22._ICS_1___	AA	CC	AC	AA	__	AC	CG	GG	AA	GG	AA	AA	AG	AA
23._ICS_1___	AA	CC	AC	AA	__	AC	CG	GG	AA	GG	AA	AA	AG	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AA	CT	CT	TT	CC	AA	TT	CT	GG	AG	TT	X_X	X_X
1._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AG	TT	X_X	X_X
2._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
3._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
4._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
5._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
6._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
7._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
8._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
9._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
10._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
11._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
12._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
13._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
14._ICS_1___	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
15._ICS_1___	AA	__	TT	__	TT	__	__	__	__	GG	__	__	X_X	X_X
16._ICS_1___	AA	__	TT	__	TT	__	__	__	__	GG	__	__	X_X	X_X
17._ICS_1___	__	__	__	__	__	__	__	__	__	CC	__	__	X_X	X_X
18._ICS_1___	__	__	__	__	TT	__	__	__	CT	GG	AA	__	X_X	X_X
19._ICS_1___	GG	AA	CC	CC	TT	TT	AC	TT	CT	GG	GG	CT	X_X	X_X
20._ICS_1___	__	__	__	__	__	__	__	__	__	CG	__	__	X_X	X_X
21._ICS_1___	AA	AA	__	__	AA	GG	AA	AA	AG	CC	AA	AA	X_X	X_X
22._ICS_1___	AA	AA	__	__	AA	GG	AA	AA	AG	CC	AA	AA	X_X	X_X
23._ICS_1___	AA	AA	__	__	AA	GG	AA	AA	AG	CC	AA	AA	X_X	X_X

Input profile: ICS_1 RUQ_847

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._ICS_1 RUQ_847

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

3._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

4._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

5._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

6._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

7._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

8._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

9._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

12._ICS_1 NA

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

13._ICS_1

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

14._ICS_1

94.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

15._ICS_1 RUQ_847B

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

16._ICS_1 RUQ_847

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.578 Cri
0.416

17._ICS_1 RUQ_847

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

18._ICS_1 RUQ_847

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._ICS_1

65 %
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

20._ICS_1 ICS1

57.7 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

21._ICS_1 RUQ_847

52.9 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

22._ICS_1 MITC-000297

52.9 %
35 shared markers

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USDA-SHRS, United States of America

23._ICS_1 ICS_1_Fld#_73_Plt#_2

52.9 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 73, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520