SNP Profiles of LCT EEN 73/D   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATAAGGTTCCCCAGCCATAAAGACCC
1._LCT_EEN_37_/F___
GGATAAGGTTCCCCAGCCATAAAGACCC
2._LCT_EEN_37_/F___
CGATAAGGTTCC__AGCCATAAAGACCC
3._LCT_EEN_37_/F___
____AAGGTTCCCCAGCC____AGACCC
4._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
5._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
6._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
7._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
8._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
9._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
10._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
11._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
12._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
13._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
14._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
15._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
16._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
17._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
18._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
19._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
20._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
21._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
22._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
23._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
24._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
25._LCT_EEN_37_/F___
CGATAAGGTTCCCCAGCCATAAAGACCC
26._LCT_EEN_37_/F___
CGATAAGG__CCCCAGCCATAAAGACCC
27._LCT_EEN_37_/F___
CGATAAGG__CCCCAGCCATAAAGACCC
28._LCT_EEN_37_/F___
CGATCCGTTTCCCCAGCTAAAGGGACCT
29._LCT_EEN_37_/F___
CGATCCGTTTCCCCAGCTAAAGGGACCT
30._LCT_EEN_37_/F___
GGATAATTTTAACCAGCCAAGGGGAA__
31._LCT_EEN_37_/F___
GGATAATTTTAACCAGCCAAGGGGAA__
32._LCT_EEN_37_/F___
CGATACGTCTACCCAACTAAGGAGACCT
33._LCT_EEN_37_/F___
CGATACGTCTACCCAACTAAGGAGACCT
34._LCT_EEN_37_/F___
CGATACGTCTACCCAACTAAGGAGACCT
35._LCT_EEN_37_/F___
CGATACGTCTACCCAACTAAGGAGACCT
36._LCT_EEN_37_/F___
CGATACGTCTACCCAACTAAGGAGACCT
37._LCT_EEN_37_/F___
CGATACGTCTACCCAACTAAGGAGACCT
38._LCT_EEN_37_/F___
CGATACGTCTACCCAACTAAGGAGACCT
39._LCT_EEN_37_/F___
CGATACGTCTACCCAACTAAGGAGACCT
40._LCT_EEN_37_/F___
CGATAACCAACCGGAGGGATAA__AC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGGGCCTTAAGGCGTTTTCGAACTAACC
1._LCT_EEN_37_/F___
GGGGCCTTAAGGCGTTTTCGAACTAACC
2._LCT_EEN_37_/F___
GGGGCCTTAAGGCGTTTTCGAACTAACC
3._LCT_EEN_37_/F___
GGCGCCTT__GGCGTT________AACC
4._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
5._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
6._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
7._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
8._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
9._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
10._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
11._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
12._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
13._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
14._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
15._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
16._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
17._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
18._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
19._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
20._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
21._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
22._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
23._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
24._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
25._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
26._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
27._LCT_EEN_37_/F___
GGGGCCTTGGGGCGTTTTCGAACTAACC
28._LCT_EEN_37_/F___
GTCGCCCTAAGTCGCTCTCGATCCAGCC
29._LCT_EEN_37_/F___
GTCGCCCTAAGTCGCTCTCGATCCAGCC
30._LCT_EEN_37_/F___
GTCGACCTGGGGGGCCCTCGAACCAGCC
31._LCT_EEN_37_/F___
GTCGACCTGGGGGGCCCTCGAACCAGCC
32._LCT_EEN_37_/F___
GTCCCCTTAGGGCGCTCTCGATCTAGCC
33._LCT_EEN_37_/F___
GTCCCCTTAGGGCGCTCTCGATCTAGCC
34._LCT_EEN_37_/F___
GTCCCCTTAGGGCGCTCTCGATCTAGCC
35._LCT_EEN_37_/F___
GTCCCCTTAGGGCGCTCTCGATCTAGCC
36._LCT_EEN_37_/F___
GTCCCCTTAGGGCGCTCTCGATCTAGCC
37._LCT_EEN_37_/F___
GTCCCCTTAGGGCGCTCTCGATCTAGCC
38._LCT_EEN_37_/F___
GTCC__TTAGGGCGCTCTCGATCTAGCC
39._LCT_EEN_37_/F___
GTCC__TTAGGGCGCTCTCGATCTAGCC
40._LCT_EEN_37_/F___
CCCGCCAA__CCCGAAAACGAAAGAAGG
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGATCCTTGGTTCCCTCTCGGGCCX_XX_X
1._LCT_EEN_37_/F___
GGATCCTTGGTTCCCTCTCGGGCCX_XX_X
2._LCT_EEN_37_/F___
GGAT__TTGGTTCCCTCTCGGG__X_XX_X
3._LCT_EEN_37_/F___
________GG______CTCGGG__X_XX_X
4._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
5._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
6._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
7._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
8._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
9._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
10._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
11._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
12._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
13._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
14._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
15._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
16._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
17._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
18._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
19._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
20._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
21._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
22._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
23._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
24._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
25._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
26._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
27._LCT_EEN_37_/F___
GGATCCTTGGTT__CTCTCGGGCCX_XX_X
28._LCT_EEN_37_/F___
AGATCCCTGTCT__CTCTCCAGCCX_XX_X
29._LCT_EEN_37_/F___
AGATCCCTGTCT__CTCTCCAGCCX_XX_X
30._LCT_EEN_37_/F___
AGAACCCCTTTTCCTTCTCGAGCCX_XX_X
31._LCT_EEN_37_/F___
AGAACCCCTTTTCCTTCTCGAGCCX_XX_X
32._LCT_EEN_37_/F___
AGAACTCTGTCCACCTCTCGAACTX_XX_X
33._LCT_EEN_37_/F___
AGAACTCTGTCCACCTCTCGAACTX_XX_X
34._LCT_EEN_37_/F___
AGAACTCTGTCCACCTCTCGAACTX_XX_X
35._LCT_EEN_37_/F___
AGAACTCTGTCCACCTCTCGAACTX_XX_X
36._LCT_EEN_37_/F___
AGAACTCTGTCCACCTCTCGAACTX_XX_X
37._LCT_EEN_37_/F___
AGAACTCTGTCCACCTCTCGAACTX_XX_X
38._LCT_EEN_37_/F___
AGAACTCTGTCCACCTCTCGAACTX_XX_X
39._LCT_EEN_37_/F___
AGAACTCTGTCCACCTCTCGAACTX_XX_X
40._LCT_EEN_37_/F___
GGAT____CCAA__AGAGCGGGGGX_XX_X

Input profile: LCT_EEN_37_/F RUQ_153

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._LCT_EEN_37_/F RUQ_153

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F

98.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

3._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

5._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

6._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

7._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

9._LCT_EEN_37_/F GC-08-160-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

16._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

17._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

18._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

19._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

20._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

21._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

22._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

23._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

24._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

25._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

26._LCT_EEN_37_/F GC-02-027-4-03

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

27._LCT_EEN_37_/F

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016

28._LCT_EEN_37_/F GC-02-027-4-03

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._LCT_EEN_37_/F

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

30._LCT_EEN_37_/F GC-08-160-4-03

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._LCT_EEN_37_/F

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

32._LCT_EEN_37_/F GC-08-160-4-03

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

33._LCT_EEN_37_/F

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

34._LCT_EEN_37_/F GC-08-160-4-03

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

35._LCT_EEN_37_/F GC-08-160-4-03

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

36._LCT_EEN_37_/F

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

37._LCT_EEN_37_/F

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

38._LCT_EEN_37_/F GC-08-160-4-03

61.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

39._LCT_EEN_37_/F

61.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

40._LCT_EEN_37_/F RUQ_153

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520