SNP Profiles of LCTEEN 37/F   View Data

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 Key

 1234567891011121314
_Input profile
GGATAAGGTTCCCCAGCCATAAAGACCC
1._RUQ_153
GGATAAGGTTCCCCAGCCATAAAGACCC
2._LCT_EEN_37_/F
CGATAAGGTTCC-AGCCATAAAGACCC
3._RUQ_153
__AAGGTTCCCCAGCC-_AGACCC
4._GC-02-027-4-03
CGATAAGGTTCCCCAGCCATAAAGACCC
5._GC-02-027-4-03
CGATAAGGTTCCCCAGCCATAAAGACCC
6._GC-02-027-4-03
CGATAAGGTTCCCCAGCCATAAAGACCC
7._GC-02-027-4-03
CGATAAGGTTCCCCAGCCATAAAGACCC
8._GC-02-027-4-03
CGATAAGGTTCCCCAGCCATAAAGACCC
9._GC-08-160-4-03
CGATAAGGTTCCCCAGCCATAAAGACCC
10._GC-08-161-4-04
CGATAAGGTTCCCCAGCCATAAAGACCC
11._GC-08-161-4-04
CGATAAGGTTCCCCAGCCATAAAGACCC
12._GC-08-161-4-04
CGATAAGGTTCCCCAGCCATAAAGACCC
13._GC-08-161-4-04
CGATAAGGTTCCCCAGCCATAAAGACCC
14._GC-08-161-4-04
CGATAAGGTTCCCCAGCCATAAAGACCC
15._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
16._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
17._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
18._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
19._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
20._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
21._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
22._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
23._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
24._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
25._LCT_EEN_37_/F
CGATAAGGTTCCCCAGCCATAAAGACCC
26._GC-02-027-4-03
CGATAAGG_CCCCAGCCATAAAGACCC
27._LCT_EEN_37_/F
CGATAAGG_CCCCAGCCATAAAGACCC
28._GC-02-027-4-03
CGATCCGTTTCCCCAGCTAAAGGGACCT
29._LCT_EEN_37_/F
CGATCCGTTTCCCCAGCTAAAGGGACCT
30._GC-08-160-4-03
GGATAATTTTAACCAGCCAAGGGGAA_
31._LCT_EEN_37_/F
GGATAATTTTAACCAGCCAAGGGGAA_
32._GC-08-160-4-03
CGATACGTCTACCCAACTAAGGAGACCT
33._LCT_EEN_37_/F
CGATACGTCTACCCAACTAAGGAGACCT
34._GC-08-160-4-03
CGATACGTCTACCCAACTAAGGAGACCT
35._GC-08-160-4-03
CGATACGTCTACCCAACTAAGGAGACCT
36._LCT_EEN_37_/F
CGATACGTCTACCCAACTAAGGAGACCT
37._LCT_EEN_37_/F
CGATACGTCTACCCAACTAAGGAGACCT
38._GC-08-160-4-03
CGATACGTCTACCCAACTAAGGAGACCT
39._LCT_EEN_37_/F
CGATACGTCTACCCAACTAAGGAGACCT
40._RUQ_153
CGATAACCAACCGGAGGGATAA_AC_
 1516171819202122232425262728
_Input profile
GGGGCCTTAAGGCGTTTTCGAACTAACC
1._RUQ_153
GGGGCCTTAAGGCGTTTTCGAACTAACC
2._LCT_EEN_37_/F
GGGGCCTTAAGGCGTTTTCGAACTAACC
3._RUQ_153
GGCGCCTT_GGCGTT____AACC
4._GC-02-027-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
5._GC-02-027-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
6._GC-02-027-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
7._GC-02-027-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
8._GC-02-027-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
9._GC-08-160-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
10._GC-08-161-4-04
GGGGCCTTGGGGCGTTTTCGAACTAACC
11._GC-08-161-4-04
GGGGCCTTGGGGCGTTTTCGAACTAACC
12._GC-08-161-4-04
GGGGCCTTGGGGCGTTTTCGAACTAACC
13._GC-08-161-4-04
GGGGCCTTGGGGCGTTTTCGAACTAACC
14._GC-08-161-4-04
GGGGCCTTGGGGCGTTTTCGAACTAACC
15._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
16._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
17._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
18._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
19._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
20._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
21._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
22._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
23._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
24._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
25._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
26._GC-02-027-4-03
GGGGCCTTGGGGCGTTTTCGAACTAACC
27._LCT_EEN_37_/F
GGGGCCTTGGGGCGTTTTCGAACTAACC
28._GC-02-027-4-03
GTCGCCCTAAGTCGCTCTCGATCCAGCC
29._LCT_EEN_37_/F
GTCGCCCTAAGTCGCTCTCGATCCAGCC
30._GC-08-160-4-03
GTCGACCTGGGGGGCCCTCGAACCAGCC
31._LCT_EEN_37_/F
GTCGACCTGGGGGGCCCTCGAACCAGCC
32._GC-08-160-4-03
GTCCCCTTAGGGCGCTCTCGATCTAGCC
33._LCT_EEN_37_/F
GTCCCCTTAGGGCGCTCTCGATCTAGCC
34._GC-08-160-4-03
GTCCCCTTAGGGCGCTCTCGATCTAGCC
35._GC-08-160-4-03
GTCCCCTTAGGGCGCTCTCGATCTAGCC
36._LCT_EEN_37_/F
GTCCCCTTAGGGCGCTCTCGATCTAGCC
37._LCT_EEN_37_/F
GTCCCCTTAGGGCGCTCTCGATCTAGCC
38._GC-08-160-4-03
GTCC_TTAGGGCGCTCTCGATCTAGCC
39._LCT_EEN_37_/F
GTCC_TTAGGGCGCTCTCGATCTAGCC
40._RUQ_153
CCCGCCAA_CCCGAAAACGAAAGAAGG
 293031323334353637383940  
_Input profile
GGATCCTTGGTTCCCTCTCGGGCCX_XX_X
1._RUQ_153
GGATCCTTGGTTCCCTCTCGGGCCX_XX_X
2._LCT_EEN_37_/F
GGAT-TTGGTTCCCTCTCGGG-X_XX_X
3._RUQ_153
____GG___CTCGGG_X_XX_X
4._GC-02-027-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
5._GC-02-027-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
6._GC-02-027-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
7._GC-02-027-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
8._GC-02-027-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
9._GC-08-160-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
10._GC-08-161-4-04
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
11._GC-08-161-4-04
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
12._GC-08-161-4-04
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
13._GC-08-161-4-04
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
14._GC-08-161-4-04
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
15._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
16._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
17._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
18._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
19._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
20._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
21._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
22._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
23._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
24._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
25._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
26._GC-02-027-4-03
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
27._LCT_EEN_37_/F
GGATCCTTGGTT_CTCTCGGGCCX_XX_X
28._GC-02-027-4-03
AGATCCCTGTCT_CTCTCCAGCCX_XX_X
29._LCT_EEN_37_/F
AGATCCCTGTCT_CTCTCCAGCCX_XX_X
30._GC-08-160-4-03
AGAACCCCTTTTCCTTCTCGAGCCX_XX_X
31._LCT_EEN_37_/F
AGAACCCCTTTTCCTTCTCGAGCCX_XX_X
32._GC-08-160-4-03
AGAACTCTGTCCACCTCTCGAACTX_XX_X
33._LCT_EEN_37_/F
AGAACTCTGTCCACCTCTCGAACTX_XX_X
34._GC-08-160-4-03
AGAACTCTGTCCACCTCTCGAACTX_XX_X
35._GC-08-160-4-03
AGAACTCTGTCCACCTCTCGAACTX_XX_X
36._LCT_EEN_37_/F
AGAACTCTGTCCACCTCTCGAACTX_XX_X
37._LCT_EEN_37_/F
AGAACTCTGTCCACCTCTCGAACTX_XX_X
38._GC-08-160-4-03
AGAACTCTGTCCACCTCTCGAACTX_XX_X
39._LCT_EEN_37_/F
AGAACTCTGTCCACCTCTCGAACTX_XX_X
40._RUQ_153
GGAT__CCAA_AGAGCGGGGGX_XX_X

Input profile: LCT_EEN_37_/F RUQ_153

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._LCT_EEN_37_/F RUQ_153

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F

98.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

3._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

5._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

6._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

7._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._LCT_EEN_37_/F GC-02-027-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

9._LCT_EEN_37_/F GC-08-160-4-03

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._LCT_EEN_37_/F GC-08-161-4-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

16._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

17._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

18._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

19._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

20._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

21._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

22._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

23._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

24._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

25._LCT_EEN_37_/F

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

26._LCT_EEN_37_/F GC-02-027-4-03

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

27._LCT_EEN_37_/F

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._LCT_EEN_37_/F GC-02-027-4-03

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._LCT_EEN_37_/F

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

30._LCT_EEN_37_/F GC-08-160-4-03

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._LCT_EEN_37_/F

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

32._LCT_EEN_37_/F GC-08-160-4-03

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

33._LCT_EEN_37_/F

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

34._LCT_EEN_37_/F GC-08-160-4-03

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

35._LCT_EEN_37_/F GC-08-160-4-03

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

36._LCT_EEN_37_/F

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

37._LCT_EEN_37_/F

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

38._LCT_EEN_37_/F GC-08-160-4-03

61.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

39._LCT_EEN_37_/F

61.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

40._LCT_EEN_37_/F RUQ_153

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520