SNP Profiles of POUND 25 /A   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGAAACGGCCCCGGAACTAAGGAAACCC
1._RB_37_[BRA]___
GGAAACGGCCCC__AACTAAGG__ACCC
2._RB_37_[BRA]___
GGAAACGG__CC__AACTAA__AAACCC
3._RB_37_[BRA]___
____AC________AA________AA__
4._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
5._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
6._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
7._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
8._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
9._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
10._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
11._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
12._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
13._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
14._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
15._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
16._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
17._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
18._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
19._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
20._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
21._RB_37_[BRA]___
GGAACCGGTTCCGGAATTAAGGAGCCCC
22._RB_37_[BRA]___
GGAACCGGTT__GGAACCAAGGAGCCCC
23._RB_37_[BRA]___
GGAACCGGTT__GGAACCAAGGAGCCCC
24._RB_37_[BRA]___
GGAACCGGTT__GGAATTAAGGAGCCCC
25._RB_37_[BRA]___
GGAACCGGTT__GGAATTAAGGAGCCCC
26._RB_37_[BRA]___
GGAACCCCAACCCCAAAAAAGG__CC__
27._RB_37_[BRA]___
GGAACCCCAACCCCAAAAAAGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGGGCCCCAAGGGGCTCTCGAACCAACT
1._RB_37_[BRA]___
__GGCCCCAAGGGGTTCTCGAACCAACT
2._RB_37_[BRA]___
GGGGCCCCAAGGGGTTCTCGAACCAACT
3._RB_37_[BRA]___
__GGCC__AAGGGG__________AA__
4._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
5._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
6._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
7._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
8._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
9._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
10._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
11._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
12._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
13._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
14._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
15._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
16._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
17._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
18._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
19._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
20._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
21._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
22._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
23._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
24._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
25._RB_37_[BRA]___
GGGGACCCAAGGGGTTTTGGAACCAACC
26._RB_37_[BRA]___
CCCGACGG__CCCCAAAAGGAAGGAAGG
27._RB_37_[BRA]___
CCCGACGG__CCCCAAAAGGAAGGAAGG
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAACTCTGGTTAACCCCCCAGCCX_XX_X
1._RB_37_[BRA]___
GGAA__TTGGTTAACCCCCCAA__X_XX_X
2._RB_37_[BRA]___
GGAA__TTGGTTAACCCTCCAACCX_XX_X
3._RB_37_[BRA]___
GG__TT__GG________CC____X_XX_X
4._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
5._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
6._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
7._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
8._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
9._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
10._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
11._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
12._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
13._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
14._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
15._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
16._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
17._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
18._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
19._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
20._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
21._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
22._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
23._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
24._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
25._RB_37_[BRA]___
GGAATTCTGGTTAACTCCCCAACCX_XX_X
26._RB_37_[BRA]___
GGAA____CCAAAAAGGGGGAAGGX_XX_X
27._RB_37_[BRA]___
GGAA____CCAA__AGGGGGAAGGX_XX_X

Input profile: RB_37_[BRA] RUQ_135

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._RB_37_[BRA]

95.7 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._RB_37_[BRA]

94.4 %
36 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

3._RB_37_[BRA] RUQ_1705

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Pur
0.997

4._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

5._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

11._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

13._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

14._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

15._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

16._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

17._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

18._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

19._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

20._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016

21._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

22._RB_37_[BRA]

82.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

23._RB_37_[BRA] GC-01-043-2-20

82.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

24._RB_37_[BRA]

82.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

25._RB_37_[BRA] GC-01-043-2-20

82.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

26._RB_37_[BRA] GC-01-43-2-20

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

27._RB_37_[BRA] GC-01-43-2-20

38.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520